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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.164397 (37 seq.)
>A171000816
CP001690
Euryarchaeota
Halogeometricum borinquense DSM 11551 PR 3 [CP001690]
1363039
1363113
+
Glu
CTC
-
¡û
>WENV180273645
OBEU01003179
[OBEU] marine metagenome; marine
150
74
-
Glu
CTC
[ENA]
¢þ
>WENV180588599
OCOP01112061
[OCOP] marine metagenome; water
136
212
+
Glu
CTC
[ENA]
¢þ
>WENV170009210
APHM01021696
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
4248
4323
+
Glu
CTC
[ENA]
¢þ
>W1910006898
BBMP01000006
Euryarchaeota
Halococcus sediminicola CBA1101 [BBMP]
222054
221978
-
Glu
CTC
[ENA]
¡û
>W1910011036
BDJH01000002
Euryarchaeota
Salella cibi CBA1134 [BDJH]
619278
619202
-
Glu
CTC
[ENA]
¡û
>W1910230720
FOYS01000004
Euryarchaeota
Halogeometricum limi CGMCC 1.8711 [FOYS]
27009
26935
-
Glu
CTC
[ENA]
¡û
>W1910230768
FOYT01000002
Euryarchaeota
Halogeometricum rufum CGMCC 1.7736 [FOYT]
12568
12494
-
Glu
CTC
[ENA]
¡û
>W1910546965
FZNK01000002
Euryarchaeota
Halorubrum ezzemoulense DSM 19316 [FZNK]
326936
326860
-
Glu
CTC
[ENA]
¡û
>W1910575005
JQKV01000002
Euryarchaeota
Halorubrum sp. BV1 [JQKV]
452785
452711
-
Glu
CTC
[ENA]
¡û
>W1910873628
NDWV01000001
Euryarchaeota
Halorubrum ezzemoulense DSM 19316 [NDWV]
288186
288110
-
Glu
CTC
[ENA]
¡û
>W1910880417
NEDJ01000001
Euryarchaeota
Halorubrum ezzemoulense DSM 17463 [NEDJ]
99732
99656
-
Glu
CTC
[ENA]
¡û
>W1910891342
NEWI01000062
Euryarchaeota
Halorubrum sp. SD612 [NEWI]
11652
11576
-
Glu
CTC
[ENA]
¡û
>W1910891392
NEWJ01000011
Euryarchaeota
Halorubrum sp. SD683 [NEWJ]
48305
48381
+
Glu
CTC
[ENA]
¡û
>W1910911717
NHNZ01000202
Euryarchaeota
Halorubrum sp. C191 [NHNZ]
14051
13975
-
Glu
CTC
[ENA]
¡û
>W1910912015
NHOW01000127
Euryarchaeota
Halorubrum ezzemoulense LD3 [NHOW]
1087
1011
-
Glu
CTC
[ENA]
¡û
>W1910912123
NHOZ01000056
Euryarchaeota
Halorubrum ezzemoulense Ga36 [NHOZ]
122496
122420
-
Glu
CTC
[ENA]
¡û
>W1910912160
NHPA01000039
Euryarchaeota
Halorubrum ezzemoulense Ga2p [NHPA]
1126
1050
-
Glu
CTC
[ENA]
¡û
>W1910912220
NHPB01000089
Euryarchaeota
Halorubrum ezzemoulense G37 [NHPB]
53902
53978
+
Glu
CTC
[ENA]
¡û
>W1911682237
QKMU01000001
Euryarchaeota
Halogeometricum sp. wsp3 [QKMU]
693301
693227
-
Glu
CTC
[ENA]
¡û
>W1911682355
QKNY01000009
Euryarchaeota
Halonotius aquaticus F13-13 [QKNY]
33173
33098
-
Glu
CTC
[ENA]
¡û
>W1911696485
QMDW01000022
Euryarchaeota
Halonotius pteroides CECT 7525 [QMDW]
13334
13409
+
Glu
CTC
[ENA]
¡û
>W1911709731
QPLT01000005
Euryarchaeota
Halorubrum sp. Atlit-26R [QPLT]
190268
190343
+
Glu
CTC
[ENA]
¡û
>W1911824335
QZWE01000007
Euryarchaeota
Halococcus sp. IIIV-5B [QZWE]
28293
28368
+
Glu
CTC
[ENA]
¡û
>W1610000760
ABTX01000001
Euryarchaeota
Halogeometricum borinquense DSM 11551 [ABTX]
2570219
2570293
+
Glu
CTC
[ENA]
¡û
>W1610003606
AGCX01000249
Euryarchaeota
Halonotius sp. J07HN4 [AGCX]
4310
4385
+
Glu
CTC
[ENA]
¡û
>W1610005348
AJRK01000428
Euryarchaeota
Halococcus hamelinensis 100A6 [AJRK]
13095
13020
-
Glu
CTC
[ENA]
¡û
>W1610005943
ALWQ01000005
Euryarchaeota
Halorubrum sp. T3 [ALWQ]
272733
272809
+
Glu
CTC
[ENA]
¡û
>W1610011761
AOHT01000013
Euryarchaeota
Halogeometricum borinquense DSM 11551 [AOHT]
44760
44834
+
Glu
CTC
[ENA]
¡û
>W1610013044
AOJF01000048
Euryarchaeota
Halorubrum litoreum JCM 13561 [AOJF]
27830
27906
+
Glu
CTC
[ENA]
¡û
>W1610013221
AOJJ01000079
Euryarchaeota
Halorubrum arcis JCM 13916 [AOJJ]
93316
93392
+
Glu
CTC
[ENA]
¡û
>W1610013305
AOJL01000027
Euryarchaeota
Halorubrum coriense DSM 10284 [AOJL]
63480
63404
-
Glu
CTC
[ENA]
¡û
>W1610013337
AOJM01000044
Euryarchaeota
Halorubrum distributum JCM 9100 [AOJM]
72345
72269
-
Glu
CTC
[ENA]
¡û
>W1610013368
AOJN01000018
Euryarchaeota
Halorubrum distributum JCM 10118 [AOJN]
48301
48377
+
Glu
CTC
[ENA]
¡û
>W1610014509
AOMB01000030
Euryarchaeota
Halococcus hamelinensis 100A6 [AOMB]
167160
167235
+
Glu
CTC
[ENA]
¡û
>W1610014697
AOMF01000174
Euryarchaeota
Halococcus thailandensis JCM 13552 [AOMF]
20875
20799
-
Glu
CTC
[ENA]
¡û
>W1610024302
ATXS01000002
Euryarchaeota
Halorubrum ezzemoulense DSM 17463 [ATXS]
260102
260178
+
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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