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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.164524 (86 seq.)
>W1711792955
MWLG01000027
Cyanobacteriota
Candidatus Synechococcus spongiarum spongiarum LMB bulk10D [MWLG]
8420
8497
+
Ile
GAT
[ENA]
¡û
>C025047
CP000435
Cyanobacteriota
Synechococcus sp. CC9311 [CP000435]
531624
531697
+
Ile
GAT
[Ensembl]
¡û
>C025058
CP000435
Cyanobacteriota
Synechococcus sp. CC9311 [CP000435]
2223333
2223260
-
Ile
GAT
[Ensembl]
¡û
>w019197
AAUA01000001
Cyanobacteriota
Synechococcus sp. RS9916 [AAUA]
816276
816198
-
Ile
GAT
[ENA]
¡û
>w013587
AANO01000009
Cyanobacteriota
Synechococcus sp. WH 5701 [AANO]
2253
2331
+
Ile
GAT
[ENA]
¡û
>w013573
AANO01000004
Cyanobacteriota
Synechococcus sp. WH 5701 [AANO]
1619
1541
-
Ile
GAT
[ENA]
¡û
>w013556
AANO01000001
Cyanobacteriota
Synechococcus sp. WH 5701 [AANO]
427245
427323
+
Ile
GAT
[ENA]
¡û
>WENV180044902
MOXS02055327
[MOXS] marine metagenome; 60 m water sample filtered on 0.2 um supor filter
354
279
-
Ile
GAT
[ENA]
¢þ
>WENV180065151
MPLY02044049
[MPLY] marine metagenome; 140 m water sample filtered on 0.2 um supor filter
330
405
+
Ile
GAT
[ENA]
¢þ
>WENV180384685
OBOY01020127
[OBOY] marine metagenome; Sterile flask
436
361
-
Ile
GAT
[ENA]
¢þ
>WENV181197665
OERB01028183
[OERB] metagenome; Caecal content
472
545
+
Ile
GAT
[ENA]
¢þ
>WENV181415506
OGCL01012656
[OGCL] hot springs metagenome; Hot spring water
694
767
+
Ile
GAT
[ENA]
¢þ
>WENV181847001
OGVY01001995
[OGVY] freshwater metagenome; freshwater
3161
3086
-
Ile
GAT
[ENA]
¢þ
>W141231491
BAUB01000037
Cyanobacteriota
Picosynechococcus sp. NKBG15041c NKBG15041c [BAUB]
1935
2009
+
Ile
GAT
[ENA]
¡û
>WENV170290563
CESA01027394
[CESA] marine metagenome genome assembly TARA_078_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
490
563
+
Ile
GAT
[ENA]
¢þ
>W141426879
JENA01000091
Cyanobacteriota
Candidatus Synechococcus spongiarum spongiarum SH4 [JENA]
2682
2758
+
Ile
GAT
[ENA]
¡û
>WENV170578483
FUFK010017405
[FUFK] metagenome; unknown
825
900
+
Ile
GAT
[ENA]
¢þ
>WENV170580688
FUFK010049643
[FUFK] metagenome; unknown
841
916
+
Ile
GAT
[ENA]
¢þ
>WENV170586327
FUFK010396744
[FUFK] metagenome; unknown
259
184
-
Ile
GAT
[ENA]
¢þ
>WENV170592271
FUFK010803566
[FUFK] metagenome; unknown
470
545
+
Ile
GAT
[ENA]
¢þ
>WENV170596108
FUFK012112871
[FUFK] metagenome; unknown
4
79
+
Ile
GAT
[ENA]
¢þ
>WENV170734166
LULK01001898
[LULK] marine metagenome; Red Sea water column Station 169 - depth 10m
4048
3973
-
Ile
GAT
[ENA]
¢þ
>WENV170760847
LUMU01000557
[LUMU] marine metagenome; Red Sea water column Station 192 - depth 100m
3420
3345
-
Ile
GAT
[ENA]
¢þ
>WENV170761533
LUMV01001013
[LUMV] marine metagenome; Red Sea water column Station 192 - depth 200m
2728
2653
-
Ile
GAT
[ENA]
¢þ
>W141464758
JFLF01000091
Cyanobacteriota
Prochlorococcus sp. scB241_528K19 [JFLF]
1278
1353
+
Ile
GAT
[ENA]
¡û
>W141466334
JFNR01000114
Cyanobacteriota
Prochlorococcus sp. scB245a_520D2 [JFNR]
154
227
+
Ile
GAT
[ENA]
¡û
>WENV170960185
MKWU01018365
[MKWU] sponge metagenome;
3176
3099
-
Ile
GAT
[ENA]
¢þ
>C191001460
AP018341
Cyanobacteriota
cyanobacterium endosymbiont of Rhopalodia gibberula [AP018341]
1575440
1575515
+
Ile
GAT
-
¡û
>C191001468
AP018341
Cyanobacteriota
cyanobacterium endosymbiont of Rhopalodia gibberula [AP018341]
3018375
3018300
-
Ile
GAT
-
¡û
>C191165427
CP039373
Cyanobacteriota
Synechococcus sp. CB0101 [CP039373]
2082984
2083059
+
Ile
GAT
-
¡û
>C191165437
CP039373
Cyanobacteriota
Synechococcus sp. CB0101 [CP039373]
2673035
2672960
-
Ile
GAT
-
¡û
>C191165442
CP039373
Cyanobacteriota
Synechococcus sp. CB0101 [CP039373]
2350174
2350099
-
Ile
GAT
-
¡û
>C09103534
CP001291
Cyanobacteriota
Gloeothece citriformis PCC 7424 [CP001291]
1330447
1330523
+
Ile
GAT
[Ensembl]
¡û
>C09103559
CP001291
Cyanobacteriota
Gloeothece citriformis PCC 7424 [CP001291]
2493896
2493820
-
Ile
GAT
[Ensembl]
¡û
>W1911176973
NQKY01000040
Cyanobacteriota
Synechococcus sp. BO 8801 [NQKY]
2521
2596
+
Ile
GAT
[ENA]
¡û
>W1810515509
QBXQ01000004
Cyanobacteriota
Prochlorococcus sp. AG-321-M21 [QBXQ]
4052
3977
-
Ile
GAT
[ENA]
¡û
>W1810516454
QCAN01000005
Cyanobacteriota
Prochlorococcus sp. AG-341-N05 [QCAN]
12061
11986
-
Ile
GAT
[ENA]
¡û
>W1810516752
QCBJ01000001
Cyanobacteriota
Prochlorococcus sp. AG-347-G20 [QCBJ]
128323
128248
-
Ile
GAT
[ENA]
¡û
>W1810516859
QCBM01000003
Cyanobacteriota
Prochlorococcus sp. AG-347-I06 [QCBM]
16084
16009
-
Ile
GAT
[ENA]
¡û
>W1810519783
QCFO01000020
Cyanobacteriota
Prochlorococcus sp. AG-363-K07 [QCFO]
17564
17639
+
Ile
GAT
[ENA]
¡û
>W1810519839
QCFR01000009
Cyanobacteriota
Prochlorococcus sp. AG-363-L19 [QCFR]
21485
21560
+
Ile
GAT
[ENA]
¡û
>W1810519997
QCFY01000002
Cyanobacteriota
Prochlorococcus sp. AG-363-O06 [QCFY]
33926
33851
-
Ile
GAT
[ENA]
¡û
>W1810520050
QCFZ01000035
Cyanobacteriota
Prochlorococcus sp. AG-363-O15 [QCFZ]
2897
2822
-
Ile
GAT
[ENA]
¡û
>W1810520149
QCGD01000011
Cyanobacteriota
Prochlorococcus sp. AG-363-P06 [QCGD]
11950
12025
+
Ile
GAT
[ENA]
¡û
>W1810520528
QCGQ01000009
Cyanobacteriota
Prochlorococcus sp. AG-388-I18 [QCGQ]
96668
96743
+
Ile
GAT
[ENA]
¡û
>W1810520594
QCGS01000016
Cyanobacteriota
Prochlorococcus sp. AG-388-L21 [QCGS]
13168
13093
-
Ile
GAT
[ENA]
¡û
>W1810521337
QCHS01000023
Cyanobacteriota
Prochlorococcus sp. AG-402-G08 [QCHS]
11008
10933
-
Ile
GAT
[ENA]
¡û
>W1810521572
QCIA01000003
Cyanobacteriota
Prochlorococcus sp. AG-402-I22 [QCIA]
34633
34558
-
Ile
GAT
[ENA]
¡û
>W1810521852
QCIJ01000036
Cyanobacteriota
Prochlorococcus sp. AG-402-K22 [QCIJ]
3834
3759
-
Ile
GAT
[ENA]
¡û
>W1810522572
QCJH01000014
Cyanobacteriota
Prochlorococcus sp. AG-409-A19 [QCJH]
16460
16385
-
Ile
GAT
[ENA]
¡û
>W1810522586
QCJI01000002
Cyanobacteriota
Prochlorococcus sp. AG-409-A22 [QCJI]
16304
16379
+
Ile
GAT
[ENA]
¡û
>W1810523269
QCKK01000001
Cyanobacteriota
Prochlorococcus sp. AG-409-N21 [QCKK]
127086
127011
-
Ile
GAT
[ENA]
¡û
>W1810523306
QCKL01000005
Cyanobacteriota
Prochlorococcus sp. AG-409-O23 [QCKL]
9517
9592
+
Ile
GAT
[ENA]
¡û
>W1810523795
QCLE01000001
Cyanobacteriota
Prochlorococcus sp. AG-412-J13 [QCLE]
162337
162412
+
Ile
GAT
[ENA]
¡û
>W1810524183
QCLS01000002
Cyanobacteriota
Prochlorococcus sp. AG-418-C09 [QCLS]
68891
68816
-
Ile
GAT
[ENA]
¡û
>W1810525115
QCNC01000002
Cyanobacteriota
Prochlorococcus sp. AG-424-E18 [QCNC]
47680
47605
-
Ile
GAT
[ENA]
¡û
>W1810527137
QCQL01000007
Cyanobacteriota
Prochlorococcus sp. AG-449-K21 [QCQL]
27341
27266
-
Ile
GAT
[ENA]
¡û
>W1810527207
QCQP01000016
Cyanobacteriota
Synechococcus sp. AG-450-M17 [QCQP]
1514
1438
-
Ile
GAT
[ENA]
¡û
>W1810527222
QCQQ01000014
Cyanobacteriota
Prochlorococcus sp. AG-455-B05 [QCQQ]
7920
7845
-
Ile
GAT
[ENA]
¡û
>W1810527670
QCRL01000039
Cyanobacteriota
Prochlorococcus sp. AG-459-P19 [QCRL]
2472
2397
-
Ile
GAT
[ENA]
¡û
>W1810527714
QCRO01000002
Cyanobacteriota
Prochlorococcus sp. AG-463-A20 [QCRO]
3069
3144
+
Ile
GAT
[ENA]
¡û
>W1810528283
QCSS01000001
Cyanobacteriota
Prochlorococcus sp. AG-670-K23 [QCSS]
19639
19564
-
Ile
GAT
[ENA]
¡û
>W1810528580
QCTG01000001
Cyanobacteriota
Synechococcus sp. AG-673-B04 [QCTG]
36598
36523
-
Ile
GAT
[ENA]
¡û
>W1810529681
QCUW01000011
Cyanobacteriota
Prochlorococcus sp. AG-679-P15 [QCUW]
19243
19318
+
Ile
GAT
[ENA]
¡û
>W1810530191
QCVX01000035
Cyanobacteriota
Prochlorococcus sp. AG-686-P11 [QCVX]
210
135
-
Ile
GAT
[ENA]
¡û
>W1511218727
JNAK01000005
Cyanobacteriota
Prochlorococcus marinus str. MIT 9123 [JNAK]
20058
20133
+
Ile
GAT
[ENA]
¡û
>W1511218908
JNAP01000007
Cyanobacteriota
Prochlorococcus marinus str. MIT 9321 [JNAP]
112466
112541
+
Ile
GAT
[ENA]
¡û
>W1511512599
JXUO01000104
Cyanobacteriota
Candidatus Synechococcus spongiarum spongiarum 142 [JXUO]
4947
4870
-
Ile
GAT
[ENA]
¡û
>W1511524864
JYFQ01000001
Cyanobacteriota
Candidatus Synechococcus spongiarum spongiarum 15L [JYFQ]
3177
3100
-
Ile
GAT
[ENA]
¡û
>W121009967
AGGA01000118
Unclassified
sea squirt metagenome P4-Papua_New_Guinea [AGGA]
12079
12003
-
Ile
GAT
[ENA]
¡û
>C131005031
CP003653
Cyanobacteriota
Stanieria cyanosphaera PCC 7437 [CP003653]
2564873
2564797
-
Ile
GAT
[Ensembl]
¡û
>C131005039
CP003653
Cyanobacteriota
Stanieria cyanosphaera PCC 7437 [CP003653]
451388
451312
-
Ile
GAT
[Ensembl]
¡û
>C131004427
CP003592
Cyanobacteriota
Pseudanabaena sp. PCC 7367 [CP003592]
2486369
2486442
+
Ile
GAT
[Ensembl]
¡û
>C131004453
CP003592
Cyanobacteriota
Pseudanabaena sp. PCC 7367 [CP003592]
1762020
1761947
-
Ile
GAT
[Ensembl]
¡û
>ENV001147
AY579912
Environmental sample from ENV division of INSDC
420
498
+
Ile
GAT
[ENA]
>ENV003564
DQ009331
Environmental sample from ENV division of INSDC
236
314
+
Ile
GAT
[ENA]
>ENV003566
DQ009332
Environmental sample from ENV division of INSDC
206
284
+
Ile
GAT
[ENA]
>ENV003602
DQ009350
Environmental sample from ENV division of INSDC
234
312
+
Ile
GAT
[ENA]
>ENV005012
EF442198
Environmental sample from ENV division of INSDC
442
520
+
Ile
GAT
[ENA]
>ENV005062
EF442228
Environmental sample from ENV division of INSDC
434
512
+
Ile
GAT
[ENA]
>ENV005093
EF513288
Environmental sample from ENV division of INSDC
683
761
+
Ile
GAT
[ENA]
>ENV005101
EF513292
Environmental sample from ENV division of INSDC
744
822
+
Ile
GAT
[ENA]
>ENV005140
EF513312
Environmental sample from ENV division of INSDC
743
821
+
Ile
GAT
[ENA]
>ENV005150
EF513317
Environmental sample from ENV division of INSDC
743
821
+
Ile
GAT
[ENA]
>ENV005164
EF513324
Environmental sample from ENV division of INSDC
744
822
+
Ile
GAT
[ENA]
>ENV005211
EF513350
Environmental sample from ENV division of INSDC
673
751
+
Ile
GAT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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