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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.16453 (71 seq.)
>W1710892052
LNDJ01000024
Gammaproteobacteria
Psychrobacter piscatorii [LNDJ]
42535
42445
-
Ser
TGA
[ENA]
¡û
>W1710915835
LNUO01000001
Gammaproteobacteria
Psychrobacter sp. ENNN9_III [LNUO]
18679
18769
+
Ser
TGA
[ENA]
¡û
>W1711227896
LXWA01000083
Gammaproteobacteria
Psychrobacter sp. SHUES1 [LXWA]
2412
2322
-
Ser
TGA
[ENA]
¡û
>W1711682894
MRYA01000001
Gammaproteobacteria
Psychrobacter sp. Cmf 22.2 [MRYA]
515017
515107
+
Ser
TGA
[ENA]
¡û
>W1711682936
MRYB01000001
Gammaproteobacteria
Psychrobacter sp. Rd 27.2 [MRYB]
406474
406564
+
Ser
TGA
[ENA]
¡û
>W1711683009
MRYC01000018
Gammaproteobacteria
Psychrobacter sp. C 20.9 [MRYC]
15019
15109
+
Ser
TGA
[ENA]
¡û
>C171019150
CP012969
Gammaproteobacteria
Psychrobacter sp. AntiMn-1 [CP012969]
1237168
1237078
-
Ser
TGA
-
¡û
>C171131088
LT799838
Gammaproteobacteria
Psychrobacter sp. DAB_AL43B [LT799838]
2485872
2485782
-
Ser
TGA
-
¡û
>W131180572
ARNF01000061
Gammaproteobacteria
Psychrobacter lutiphocae DSM 21542 [ARNF]
22960
23050
+
Ser
TGA
[ENA]
¡û
>W131180573
ARNF01000061
Gammaproteobacteria
Psychrobacter lutiphocae DSM 21542 [ARNF]
23243
23333
+
Ser
TGA
[ENA]
¡û
>C017897
CP000713
Gammaproteobacteria
Psychrobacter sp. PRwf-1 [CP000713]
1911466
1911556
+
Ser
TGA
[Ensembl]
¡û
>C017898
CP000713
Gammaproteobacteria
Psychrobacter sp. PRwf-1 [CP000713]
1911745
1911835
+
Ser
TGA
[Ensembl]
¡û
>WENV180101087
OAOU01000343
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
1633
1543
-
Ser
TGA
[ENA]
¢þ
>W141086185
AUSW01000031
Gammaproteobacteria
Psychrobacter aquaticus CMS 56 [AUSW]
9685
9595
-
Ser
TGA
[ENA]
¡û
>W141195667
AYUI01000038
Gammaproteobacteria
Psychrobacter sp. TB2 [AYUI]
39508
39418
-
Ser
TGA
[ENA]
¡û
>W141199972
AYXM01000081
Gammaproteobacteria
Psychrobacter sp. AC24 [AYXM]
163071
162981
-
Ser
TGA
[ENA]
¡û
>W141200008
AYXN01000034
Gammaproteobacteria
Psychrobacter sp. TB15 [AYXN]
39675
39585
-
Ser
TGA
[ENA]
¡û
>W141200512
AYXZ01000078
Gammaproteobacteria
Psychrobacter sp. TB47 [AYXZ]
9815
9725
-
Ser
TGA
[ENA]
¡û
>W141200552
AYYA01000004
Gammaproteobacteria
Psychrobacter sp. TB67 [AYYA]
148335
148245
-
Ser
TGA
[ENA]
¡û
>WENV182550237
OJBZ01016582
[OJBZ] seawater metagenome; Sea water
973
883
-
Ser
TGA
[ENA]
¢þ
>WENV182562538
OJDZ01008024
[OJDZ] seawater metagenome; Sea water
19
109
+
Ser
TGA
[ENA]
¢þ
>WENV183704189
PDWI01000071
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
118387
118297
-
Ser
TGA
[ENA]
¢þ
>WENV183711245
PDWI01064045
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2911
2821
-
Ser
TGA
[ENA]
¢þ
>WENV183712277
PDWI01094419
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2142
2232
+
Ser
TGA
[ENA]
¢þ
>WENV183712910
PDWI01118635
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2
92
+
Ser
TGA
[ENA]
¢þ
>WENV183716390
PDWI01305355
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
744
654
-
Ser
TGA
[ENA]
¢þ
>WENV183716702
PDWJ01000142
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
84332
84242
-
Ser
TGA
[ENA]
¢þ
>WENV183720271
PDWJ01030657
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
19
109
+
Ser
TGA
[ENA]
¢þ
>WENV170014710
AYSL01006143
[AYSL] marine sediment metagenome; marine sediment samples in the proximity of a phosphate-oil terminal
669
759
+
Ser
TGA
[ENA]
¢þ
>WENV170243526
CEQO01157805
[CEQO] marine metagenome genome assembly TARA_078_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
628
538
-
Ser
TGA
[ENA]
¢þ
>WENV170290639
CESA01035457
[CESA] marine metagenome genome assembly TARA_078_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
848
758
-
Ser
TGA
[ENA]
¢þ
>WENV170379943
CETV01259862
[CETV] marine metagenome genome assembly TARA_133_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
329
239
-
Ser
TGA
[ENA]
¢þ
>WENV170579684
FUFK010040363
[FUFK] metagenome; unknown
2639
2549
-
Ser
TGA
[ENA]
¢þ
>WENV170579891
FUFK010042228
[FUFK] metagenome; unknown
8764
8854
+
Ser
TGA
[ENA]
¢þ
>WENV170590714
FUFK010732348
[FUFK] metagenome; unknown
1692
1602
-
Ser
TGA
[ENA]
¢þ
>WENV170592924
FUFK010827947
[FUFK] metagenome; unknown
1126
1036
-
Ser
TGA
[ENA]
¢þ
>WENV170593732
FUFK010989169
[FUFK] metagenome; unknown
248
158
-
Ser
TGA
[ENA]
¢þ
>WENV170790674
MDSV01069960
[MDSV] marine metagenome; seawater
2259
2169
-
Ser
TGA
[ENA]
¢þ
>WENV170822287
MDSY01037637
[MDSY] marine metagenome; seawater
1745
1655
-
Ser
TGA
[ENA]
¢þ
>WENV170825059
MDSY01086914
[MDSY] marine metagenome; seawater
2951
3041
+
Ser
TGA
[ENA]
¢þ
>C181185209
CP029789
Gammaproteobacteria
Psychrobacter sp. YP14 [CP029789]
1735651
1735741
+
Ser
TGA
-
¡û
>C181185210
CP029789
Gammaproteobacteria
Psychrobacter sp. YP14 [CP029789]
1735929
1736019
+
Ser
TGA
-
¡û
>W09105577
AAPX01000011
Gammaproteobacteria
Psychrobacter sp. PRwf-1 [AAPX]
1228
1138
-
Ser
TGA
[ENA]
¡û
>W09105578
AAPX01000011
Gammaproteobacteria
Psychrobacter sp. PRwf-1 [AAPX]
949
859
-
Ser
TGA
[ENA]
¡û
>C191163836
CP039251
Gammaproteobacteria
Psychrobacter sp. PAMC27889 [CP039251]
723545
723635
+
Ser
TGA
-
¡û
>W141701343
JMKP01000011
Gammaproteobacteria
Psychrobacter phenylpyruvicus DSM 7000 [JMKP]
10738
10648
-
Ser
TGA
[ENA]
¡û
>W141701344
JMKP01000011
Gammaproteobacteria
Psychrobacter phenylpyruvicus DSM 7000 [JMKP]
10494
10404
-
Ser
TGA
[ENA]
¡û
>W1910372486
FUGD01000088
Gammaproteobacteria
Psychrobacter pasteurii CIP 110853 [FUGD]
8027
8117
+
Ser
TGA
[ENA]
¡û
>W1910372487
FUGD01000088
Gammaproteobacteria
Psychrobacter pasteurii CIP 110853 [FUGD]
8271
8361
+
Ser
TGA
[ENA]
¡û
>W1910372532
FUGE01000172
Gammaproteobacteria
Psychrobacter piechaudii CIP 110854 [FUGE]
308
398
+
Ser
TGA
[ENA]
¡û
>W1910377580
FUKN01000001
Gammaproteobacteria
Psychrobacter sp. JB385 [FUKN]
447401
447491
+
Ser
TGA
[ENA]
¡û
>W1910891655
NEXR01000009
Gammaproteobacteria
Psychrobacter sp. L7 [NEXR]
17873
17783
-
Ser
TGA
[ENA]
¡û
>W1910891758
NEXU01000001
Gammaproteobacteria
Psychrobacter sp. DAB_AL32B [NEXU]
11163
11253
+
Ser
TGA
[ENA]
¡û
>W1911203665
NRGY01000002
Gammaproteobacteria
Psychrobacter sp. JB193 [NRGY]
740517
740607
+
Ser
TGA
[ENA]
¡û
>W1911397551
NWFK02000001
Gammaproteobacteria
Psychrobacter sp. FDAARGOS_221 [NWFK]
617609
617699
+
Ser
TGA
[ENA]
¡û
>W1911397552
NWFK02000001
Gammaproteobacteria
Psychrobacter sp. FDAARGOS_221 [NWFK]
617836
617926
+
Ser
TGA
[ENA]
¡û
>W1911534892
OLML01000001
Gammaproteobacteria
Psychrobacter sp. Marseille-P5312 [OLML]
321013
320923
-
Ser
TGA
[ENA]
¡û
>W1810157372
PJBX01000142
Gammaproteobacteria
Psychrobacter sp. Sarcosine-02u-2 [PJBX]
12773
12863
+
Ser
TGA
[ENA]
¡û
>W1810157429
PJBY01000098
Gammaproteobacteria
Psychrobacter sp. Sarcosine-3u-12 [PJBY]
16321
16411
+
Ser
TGA
[ENA]
¡û
>C151097234
CP012678
Gammaproteobacteria
Psychrobacter urativorans R10.10B [CP012678]
2288563
2288653
+
Ser
TGA
-
¡û
>W11163481
AFHU01000150
Gammaproteobacteria
Psychrobacter sp. 1501(2011) [AFHU]
1732
1822
+
Ser
TGA
[ENA]
¡û
>W11163482
AFHU01000150
Gammaproteobacteria
Psychrobacter sp. 1501(2011) [AFHU]
1976
2066
+
Ser
TGA
[ENA]
¡û
>C161042756
CP012529
Gammaproteobacteria
Psychrobacter sp. P2G3 [CP012529]
2361245
2361155
-
Ser
TGA
-
¡û
>C161042804
CP012533
Gammaproteobacteria
Psychrobacter sp. P11G5 [CP012533]
2429994
2429904
-
Ser
TGA
[Ensembl]
¡û
>C161079283
CP014945
Gammaproteobacteria
Psychrobacter alimentarius PAMC 27889 [CP014945]
2521896
2521806
-
Ser
TGA
[Ensembl]
¡û
>W1610071759
BCUH01000071
Gammaproteobacteria
Psychrobacter phenylpyruvicus DSM 7000 = NBRC 102152 [BCUH]
10137
10047
-
Ser
TGA
[ENA]
¡û
>W1610752318
LNDJ01000024
Gammaproteobacteria
Psychrobacter piscatorii [LNDJ]
42535
42445
-
Ser
TGA
[ENA]
¡û
>W1610774074
LNUO01000001
Gammaproteobacteria
Psychrobacter sp. ENNN9_III [LNUO]
18679
18769
+
Ser
TGA
[ENA]
¡û
>W1611011860
LXWA01000083
Gammaproteobacteria
Psychrobacter sp. SHUES1 [LXWA]
2412
2322
-
Ser
TGA
[ENA]
¡û
>W1710068961
BCUH01000071
Gammaproteobacteria
Psychrobacter phenylpyruvicus DSM 7000 = NBRC 102152 [BCUH]
10137
10047
-
Ser
TGA
[ENA]
¡û
>W1710513799
FNAL01000003
Gammaproteobacteria
Psychrobacter pacificensis [FNAL]
15527
15617
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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