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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.164812 (22 seq.)
>WENV180342327
OBLJ01005698
[OBLJ] soil metagenome; Clay
1421
1345
-
Ile
GAT
[ENA]
¢þ
>WENV181189327
OEOF01024948
[OEOF] activated sludge metagenome; Activated Sludge
571
495
-
Ile
GAT
[ENA]
¢þ
>WENV181285832
OFGU01000835
[OFGU] soil metagenome; Clay
3330
3254
-
Ile
GAT
[ENA]
¢þ
>WENV181291774
OFHD01000717
[OFHD] soil metagenome; Clay
3380
3456
+
Ile
GAT
[ENA]
¢þ
>WENV181412448
OGCK01000354
[OGCK] hot springs metagenome; hot spring sediment
8255
8331
+
Ile
GAT
[ENA]
¢þ
>W141254849
CBTK010000065
Gammaproteobacteria
Candidatus Contendobacter odensis odensis Run_B_J11 [CBTK]
3592
3516
-
Ile
GAT
[ENA]
¡û
>WENV183697914
OUNK010351003
[OUNK] metagenome; soil
2233
2157
-
Ile
GAT
[ENA]
¢þ
>WENV170713841
LNFM01044073
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1349
1425
+
Ile
GAT
[ENA]
¢þ
>C191138596
CP035300
Gammaproteobacteria
Dyella sp. M7H15-1 [CP035300]
2668931
2669007
+
Ile
GAT
-
¡û
>C191138612
CP035300
Gammaproteobacteria
Dyella sp. M7H15-1 [CP035300]
1913980
1913904
-
Ile
GAT
-
¡û
>C191186017
CP041046
Gammaproteobacteria
Luteibacter pinisoli MAH-14 [CP041046]
4350686
4350610
-
Ile
GAT
-
¡û
>C191186020
CP041046
Gammaproteobacteria
Luteibacter pinisoli MAH-14 [CP041046]
3979870
3979794
-
Ile
GAT
-
¡û
>SRA1002078
SRR001308.230074
Metagenomic characterization of a wastewater treatment plant (SRP000180)
23
99
+
Ile
GAT
[SRA]
>W1810390172
PXYG01000028
Gammaproteobacteria
Zobellella endophytica 59N8 [PXYG]
271
195
-
Ile
GAT
[ENA]
¡û
>W1810785115
QRBE01000028
Gammaproteobacteria
Dyella monticola 4G-K06 [QRBE]
3629
3553
-
Ile
GAT
[ENA]
¡û
>W1810785162
QRBF01000015
Gammaproteobacteria
Dyella psychrodurans 4MSK11 [QRBF]
3332
3256
-
Ile
GAT
[ENA]
¡û
>C161041419
CP012373
Gammaproteobacteria
Beggiatoa leptomitoformis D-402 [CP012373]
3678813
3678889
+
Ile
GAT
[Ensembl]
¡û
>C161041434
CP012373
Gammaproteobacteria
Beggiatoa leptomitoformis D-402 [CP012373]
3009180
3009104
-
Ile
GAT
[Ensembl]
¡û
>W1710515295
FNBR01000012
Gammaproteobacteria
Dyella sp. 333MFSha [FNBR]
2753
2677
-
Ile
GAT
[ENA]
¡û
>W1710548728
FODZ01000015
Gammaproteobacteria
Luteibacter sp. UNC138MFCol5.1 [FODZ]
1598
1674
+
Ile
GAT
[ENA]
¡û
>W1710555195
FOJE01000001
Gammaproteobacteria
Luteibacter sp. 329MFSha [FOJE]
2502608
2502532
-
Ile
GAT
[ENA]
¡û
>W1710555225
FOJE01000004
Gammaproteobacteria
Luteibacter sp. 329MFSha [FOJE]
340992
341068
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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