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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.165016 (33 seq.)
>W131099210
AOSV01000027
Thermodesulfobacteriota
Desulfocurvibacter africanus PCS [AOSV]
99650
99726
+
Pro
CGG
[ENA]
¡û
>W1711411784
MGTN01000140
Thermodesulfobacteriota
Desulfovibrionales bacterium GWA2_65_9 [MGTN]
18794
18870
+
Pro
CGG
[ENA]
¡û
>W131221740
AUAR01000020
Thermodesulfobacteriota
Desulfomicrobium escambiense DSM 10707 [AUAR]
16602
16526
-
Pro
CGG
[ENA]
¡û
>W131224823
AUDB01000013
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [AUDB]
6059
5983
-
Pro
CGG
[ENA]
¡û
>W131208391
ATHI01000028
Thermodesulfobacteriota
Alkalidesulfovibrio alkalitolerans DSM 16529 [ATHI]
149412
149336
-
Pro
CGG
[ENA]
¡û
>W131236031
AULZ01000002
Thermodesulfobacteriota
Desulfocurvibacter africanus DSM 2603 [AULZ]
127604
127528
-
Pro
CGG
[ENA]
¡û
>WENV180042875
LQAG01010105
[LQAG] bioreactor metagenome; bioreactor_3 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
110
34
-
Pro
CGG
[ENA]
¢þ
>WENV180043584
LQAI01001364
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
3808
3884
+
Pro
CGG
[ENA]
¢þ
>WENV180044096
LQAJ01003610
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
1005
1081
+
Pro
CGG
[ENA]
¢þ
>WENV183707764
PDWI01010498
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3211
3135
-
Pro
CGG
[ENA]
¢þ
>WENV183747083
PPCM01000174
[PPCM] marine sediment metagenome; marine sediment
47965
47889
-
Pro
CGG
[ENA]
¢þ
>WENV183747683
PPCM01017123
[PPCM] marine sediment metagenome; marine sediment
783
859
+
Pro
CGG
[ENA]
¢þ
>WENV183747727
PPCM01022568
[PPCM] marine sediment metagenome; marine sediment
659
583
-
Pro
CGG
[ENA]
¢þ
>WENV170419615
CEUM01134568
[CEUM] marine metagenome genome assembly TARA_123_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
20164
20240
+
Pro
CGG
[ENA]
¢þ
>WENV170437532
CEUU01046793
[CEUU] marine metagenome genome assembly TARA_122_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
76
1
-
Pro
CGG
[ENA]
¢þ
>WENV170440749
CEUV01126383
[CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
346
270
-
Pro
CGG
[ENA]
¢þ
>WENV170469583
CEVF01126655
[CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
250
326
+
Pro
CGG
[ENA]
¢þ
>WENV170898395
MDTD01125283
[MDTD] marine metagenome; seawater
14073
13997
-
Pro
CGG
[ENA]
¢þ
>C181226977
LT907975
Thermodesulfobacteriota
Pseudodesulfovibrio profundus 500-1 [LT907975]
997089
997165
+
Pro
CGG
-
¡û
>W09118030
ACCN01000011
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
79557
79481
-
Pro
CGG
[ENA]
¡û
>C141011946
FO203519
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis [FO203519]
2147305
2147229
-
Pro
CGG
-
¡û
>C09104216
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
3003712
3003788
+
Pro
CGG
[Ensembl]
¡û
>W1911737992
QTZO01000001
Thermodesulfobacteriota
Pseudodesulfovibrio sp. S3 [QTZO]
368041
367965
-
Pro
CGG
[ENA]
¡û
>W10111398
ADDI01000031
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
34512
34588
+
Pro
CGG
[ENA]
¡û
>C11106851
CP002431
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [CP002431]
2076623
2076699
+
Pro
CGG
[Ensembl]
¡û
>W11114341
ADDI01000031
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
34512
34588
+
Pro
CGG
[ENA]
¡û
>W11149104
AEUJ01000001
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [AEUJ]
237174
237098
-
Pro
CGG
[ENA]
¡û
>W11162722
AFHE01000002
Thermodesulfobacteriota
Desulfocurvibacter africanus str. Walvis Bay [AFHE]
1721424
1721348
-
Pro
CGG
[ENA]
¡û
>C121009014
CP003220
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [CP003220]
237174
237098
-
Pro
CGG
[Ensembl]
¡û
>C121009058
CP003221
Thermodesulfobacteriota
Desulfocurvibacter africanus subsp. africanus str. Walvis Bay [CP003221]
2345777
2345701
-
Pro
CGG
[Ensembl]
¡û
>C161068256
CP014206
Thermodesulfobacteriota
Pseudodesulfovibrio indicus J2 [CP014206]
2944749
2944825
+
Pro
CGG
[Ensembl]
¡û
>C131017912
FO203427
Thermodesulfobacteriota
Pseudodesulfovibrio piezophilus C1TLV30 type strain: C1TLV30 [FO203427]
779020
779096
+
Pro
CGG
[Ensembl]
¡û
>C131018128
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
2147305
2147229
-
Pro
CGG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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