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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.165016 (8 seq.)
>W131218785
ATYA01000002
Alphaproteobacteria
Methylocapsa acidiphila B2 [ATYA]
644069
644146
+
Trp
CCA
[ENA]
¡û
>WENV180101338
OAOU01031493
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
257
334
+
Trp
CCA
[ENA]
¢þ
>C08001579
CP001016
Alphaproteobacteria
Beijerinckia indica subsp. indica ATCC 9039 [CP001016]
1307425
1307502
+
Trp
CCA
[Ensembl]
¡û
>WENV170003253
AGTN01275872
[AGTN] bioreactor metagenome; poplar biomass
125
48
-
Trp
CCA
[ENA]
¢þ
>C191028879
CP024846
Alphaproteobacteria
Beijerinckiaceae bacterium MG08 [CP024846]
3200919
3200842
-
Trp
CCA
-
¡û
>C191220358
LR536450
Alphaproteobacteria
Methylocella tundrae [LR536450]
1012521
1012444
-
Trp
CCA
-
¡û
>C191221053
LR590083
Alphaproteobacteria
Beijerinckiaceae bacterium RH AL1 [LR590083]
777008
777085
+
Trp
CCA
-
¡û
>C09107925
CP001280
Alphaproteobacteria
Methylocella silvestris BL2 [CP001280]
809078
809001
-
Trp
CCA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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