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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.165249 (9 seq.)
>WENV181174896
OEJP01008592
[OEJP] human metagenome; G_DNA_Stool
778
852
+
Met
CAT
[ENA]
¢þ
>WENV181796404
OGRT01016983
[OGRT] human gut metagenome; faeces
860
934
+
Met
CAT
[ENA]
¢þ
>WENV182293161
OHWC01000068
[OHWC] human gut metagenome; feces
21962
21888
-
Ile2
CAT
[ENA]
¢þ
>WENV182309479
OHXK01001531
[OHXK] human gut metagenome; feces
5361
5287
-
Ile2
CAT
[ENA]
¢þ
>WENV182341494
OIAG01000269
[OIAG] human gut metagenome; feces
14215
14289
+
Ile2
CAT
[ENA]
¢þ
>WENV182371821
OICV01000281
[OICV] human gut metagenome; feces
2820
2894
+
Ile2
CAT
[ENA]
¢þ
>WENV182655725
OJMI01075640
[OJMI] human gut metagenome; feces
73
147
+
Met
CAT
[ENA]
¢þ
>WENV183043388
OLGD01051169
[OLGD] human gut metagenome; faeces
575
501
-
Met
CAT
[ENA]
¢þ
>WENV183639759
OQVI01054880
[OQVI] human gut metagenome; human gut
333
407
+
Ile2
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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