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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.165257 (6 seq.)
>WENV183700703
PDMW01085974
[PDMW] marine metagenome; viruses from water sample; < 0.22 micron filtered, nuclease treated, low buoyant density
3867
3791
-
Ile2
CAT
[ENA]
¢þ
>WENV183701561
PDMX01169549
[PDMX] marine metagenome; viruses from water sample; < 0.22 micron filtered, nuclease treated
204
128
-
Ile2
CAT
[ENA]
¢þ
>WENV170402216
CEUE01309436
[CEUE] marine metagenome genome assembly TARA_133_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
407
483
+
Met
CAT
[ENA]
¢þ
>WENV170871286
MDTB01203649
[MDTB] marine metagenome; seawater
670
746
+
Met
CAT
[ENA]
¢þ
>WENV170884317
MDTC01181773
[MDTC] marine metagenome; seawater
2784
2708
-
Met
CAT
[ENA]
¢þ
>WENV170926254
MDTG01097278
[MDTG] marine metagenome; seawater
2062
2138
+
Met
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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