This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.165533 (33 seq.)
>WENV170009014
APHM01020366
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
2616
2541
-
Val
GAC
[ENA]
¢þ
>WENV170681171
LFFM01000163
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
34644
34570
-
Val
GAC
[ENA]
¢þ
>WENV170681431
LFFM01000834
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
9021
8946
-
Val
GAC
[ENA]
¢þ
>WENV170681442
LFFM01000908
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
14104
14178
+
Val
GAC
[ENA]
¢þ
>WENV170681611
LFFM01001659
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
15228
15302
+
Val
GAC
[ENA]
¢þ
>WENV170681697
LFFM01002101
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
12443
12369
-
Val
GAC
[ENA]
¢þ
>W1910006651
BBJN01000011
Euryarchaeota
Halolamina rubra CBA1107 [BBJN]
35159
35234
+
Val
GAC
[ENA]
¡û
>W1910006748
BBJP01000013
Euryarchaeota
Halorubrum halophilum B8 [BBJP]
8155
8080
-
Val
GAC
[ENA]
¡û
>W1910193750
CVRT01000078
Euryarchaeota
Halorubrum sp. SD626R [CVRT]
22176
22102
-
Val
GAC
[ENA]
¡û
>W1910230644
FOYN01000001
Euryarchaeota
Halorubrum sodomense RD 26 [FOYN]
852698
852624
-
Val
GAC
[ENA]
¡û
>W1910281641
FQWV01000008
Euryarchaeota
Halobaculum gomorrense DSM 9297 [FQWV]
99032
98957
-
Val
GAC
[ENA]
¡û
>W1910546975
FZNK01000004
Euryarchaeota
Halorubrum ezzemoulense DSM 19316 [FZNK]
111971
111896
-
Val
GAC
[ENA]
¡û
>W1910572764
JNFH02000056
Euryarchaeota
Halorubrum saccharovorum H3 [JNFH]
10067
10141
+
Val
GAC
[ENA]
¡û
>W1910574992
JQKV01000001
Euryarchaeota
Halorubrum sp. BV1 [JQKV]
136072
135998
-
Val
GAC
[ENA]
¡û
>W1910873653
NDWV01000008
Euryarchaeota
Halorubrum ezzemoulense DSM 19316 [NDWV]
26398
26323
-
Val
GAC
[ENA]
¡û
>W1910880424
NEDJ01000003
Euryarchaeota
Halorubrum ezzemoulense DSM 17463 [NEDJ]
26887
26812
-
Val
GAC
[ENA]
¡û
>W1910891376
NEWJ01000005
Euryarchaeota
Halorubrum sp. SD683 [NEWJ]
35820
35745
-
Val
GAC
[ENA]
¡û
>W1910911703
NHNZ01000137
Euryarchaeota
Halorubrum sp. C191 [NHNZ]
5693
5768
+
Val
GAC
[ENA]
¡û
>W1910912095
NHOY01000115
Euryarchaeota
Halorubrum sp. Hd13 [NHOY]
14848
14922
+
Val
GAC
[ENA]
¡û
>W1910912114
NHOZ01000014
Euryarchaeota
Halorubrum ezzemoulense Ga36 [NHOZ]
54602
54677
+
Val
GAC
[ENA]
¡û
>W1910912149
NHPA01000002
Euryarchaeota
Halorubrum ezzemoulense Ga2p [NHPA]
37080
37005
-
Val
GAC
[ENA]
¡û
>W1910912229
NHPB01000117
Euryarchaeota
Halorubrum ezzemoulense G37 [NHPB]
6299
6374
+
Val
GAC
[ENA]
¡û
>W1910912412
NHPG01000115
Euryarchaeota
Halorubrum sp. Ea1 [NHPG]
9855
9929
+
Val
GAC
[ENA]
¡û
>W1910912509
NHPJ01000080
Euryarchaeota
Halorubrum halodurans Cb34 [NHPJ]
12576
12651
+
Val
GAC
[ENA]
¡û
>W1911696713
QMIM01000001
Euryarchaeota
Halorubrum sp. 48-1-W [QMIM]
34673
34747
+
Val
GAC
[ENA]
¡û
>SRA1013815
SRR023631.77806
High saltern (Pond 5) microbes attempt 1 (SRP001107)
41
116
+
Val
GAC
[SRA]
>C151003911
CP002988
Euryarchaeota
halophilic archaeon DL31 [CP002988]
1376302
1376377
+
Val
GAC
[Ensembl]
¡û
>W1610003682
AGCZ01000591
Euryarchaeota
halophilic archaeon J07HB67 [AGCZ]
2616
2541
-
Val
GAC
[ENA]
¡û
>W1610012937
AOJD01000021
Euryarchaeota
Halorubrum tebenquichense DSM 14210 [AOJD]
26017
26092
+
Val
GAC
[ENA]
¡û
>W1610013224
AOJJ01000086
Euryarchaeota
Halorubrum arcis JCM 13916 [AOJJ]
7124
7049
-
Val
GAC
[ENA]
¡û
>W1610013372
AOJN01000022
Euryarchaeota
Halorubrum distributum JCM 10118 [AOJN]
33025
32950
-
Val
GAC
[ENA]
¡û
>W1610083269
CBVY010000014
Euryarchaeota
Halorubrum sp. AJ67 [CBVY]
39452
39527
+
Val
GAC
[ENA]
¡û
>W1610779633
LOAJ01000001
Euryarchaeota
Halorubrum aethiopicum SAH-A6 [LOAJ]
2516994
2516920
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK