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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.165609 (5 seq.)
>WENV180060202
MPLX02156844
[MPLX] marine metagenome; 120 m water sample filtered on 0.2 um supor filter
140
225
+
Leu
CAA
[ENA]
¢þ
>WENV180072967
MPMA02052485
[MPMA] marine metagenome; 180 m water sample filtered on 0.2 um supor filter
2457
2372
-
Leu
CAA
[ENA]
¢þ
>WENV170383046
CETX01069102
[CETX] marine metagenome genome assembly TARA_138_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4947
5032
+
Leu
CAA
[ENA]
¢þ
>WENV170598097
FUWD010025093
[FUWD] metagenome; unknown
761
676
-
Leu
CAA
[ENA]
¢þ
>WENV170598111
FUWD010025525
[FUWD] metagenome; unknown
210
295
+
Leu
CAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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