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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.165640 (6 seq.)
>WENV180045509
MOXS02136784
[MOXS] marine metagenome; 60 m water sample filtered on 0.2 um supor filter
227
152
-
Arg
CCT
[ENA]
¢þ
>WENV180050917
MPLU02179775
[MPLU] marine metagenome; 90 m water sample filtered on 0.2 um supor filter
793
719
-
Arg
CCT
[ENA]
¢þ
>WENV183804235
PVBE010911323
[PVBE] marine metagenome; water
812
737
-
Arg
CCT
[ENA]
¢þ
>WENV170381856
CETW01242763
[CETW] marine metagenome genome assembly TARA_052_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
345
270
-
Arg
CCT
[ENA]
¢þ
>WENV170886742
MDTC01227070
[MDTC] marine metagenome; seawater
2180
2105
-
Arg
CCT
[ENA]
¢þ
>WENV170936354
MDTG01273884
[MDTG] marine metagenome; seawater
11330
11405
+
Arg
CCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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