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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.165719 (8 seq.)
>WENV170331896
CESW01106553
[CESW] marine metagenome genome assembly TARA_096_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
220
296
+
Pro
TGG
[ENA]
¢þ
>WENV170401498
CEUE01241509
[CEUE] marine metagenome genome assembly TARA_133_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
298
222
-
Pro
TGG
[ENA]
¢þ
>WENV170469552
CEVF01124153
[CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
267
343
+
Pro
TGG
[ENA]
¢þ
>WENV170525186
CEWH01092491
[CEWH] marine metagenome genome assembly TARA_109_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
170
246
+
Pro
TGG
[ENA]
¢þ
>WENV170856324
MDTA01221681
[MDTA] marine metagenome; seawater
802
726
-
Pro
TGG
[ENA]
¢þ
>WENV170938781
MDTG01314840
[MDTG] marine metagenome; seawater
73
-1
-
Pro
TGG
[ENA]
¢þ
>SRA1001967
SRR001308.152301
Metagenomic characterization of a wastewater treatment plant (SRP000180)
236
160
-
Pro
TGG
[SRA]
>SRA1002024
SRR001308.192527
Metagenomic characterization of a wastewater treatment plant (SRP000180)
236
160
-
Pro
TGG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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