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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.16587 (47 seq.)
>W1711386458
MEFK01000144
Betaproteobacteria
Thiobacillus sp. SCN 63-374 [MEFK]
6019
5929
-
Ser
GGA
[ENA]
¡û
>W1711386475
MEFL01000076
Betaproteobacteria
Thiobacillus sp. SCN 62-729 [MEFL]
8
98
+
Ser
GGA
[ENA]
¡û
>W1711387351
MEGO01000003
Betaproteobacteria
Thiobacillus sp. SCN 64-317 [MEGO]
13291
13201
-
Ser
GGA
[ENA]
¡û
>W1711387401
MEGP01000018
Betaproteobacteria
Thiobacillus sp. SCN 63-57 [MEGP]
33311
33221
-
Ser
GGA
[ENA]
¡û
>W131161560
AQXU01000020
Betaproteobacteria
Leeia oryzae DSM 17879 [AQXU]
126540
126450
-
Ser
GGA
[ENA]
¡û
>W1711504052
MKUE01000123
Betaproteobacteria
Thiobacillus sp. 65-1059 [MKUE]
68489
68399
-
Ser
GGA
[ENA]
¡û
>W1711506492
MKWL01000011
Betaproteobacteria
Thiobacillus sp. 0-1251 [MKWL]
142191
142101
-
Ser
GGA
[ENA]
¡û
>W1711506524
MKWM01000011
Betaproteobacteria
Thiobacillus sp. 63-78 [MKWM]
135662
135752
+
Ser
GGA
[ENA]
¡û
>W1711664329
MQZX01000019
Betaproteobacteria
Chromobacterium violaceum pseudoviolaceum [MQZX]
87836
87926
+
Ser
GGA
[ENA]
¡û
>W1711664330
MQZX01000019
Betaproteobacteria
Chromobacterium violaceum pseudoviolaceum [MQZX]
87980
88070
+
Ser
GGA
[ENA]
¡û
>W1711747337
MUKQ01000001
Betaproteobacteria
Chromobacterium violaceum [MUKQ]
94313
94403
+
Ser
GGA
[ENA]
¡û
>W1711747338
MUKQ01000001
Betaproteobacteria
Chromobacterium violaceum [MUKQ]
94457
94547
+
Ser
GGA
[ENA]
¡û
>W1711747443
MUKR01000003
Betaproteobacteria
Chromobacterium violaceum [MUKR]
388639
388549
-
Ser
GGA
[ENA]
¡û
>W1711747444
MUKR01000003
Betaproteobacteria
Chromobacterium violaceum [MUKR]
388495
388405
-
Ser
GGA
[ENA]
¡û
>W1711747524
MUKS01000004
Betaproteobacteria
Chromobacterium violaceum [MUKS]
7773
7863
+
Ser
GGA
[ENA]
¡û
>W1711747790
MUKW01000001
Betaproteobacteria
Chromobacterium violaceum [MUKW]
94237
94327
+
Ser
GGA
[ENA]
¡û
>W1711747791
MUKW01000001
Betaproteobacteria
Chromobacterium violaceum [MUKW]
94381
94471
+
Ser
GGA
[ENA]
¡û
>W1711747869
MUKX01000001
Betaproteobacteria
Chromobacterium violaceum [MUKX]
94237
94327
+
Ser
GGA
[ENA]
¡û
>W1711747870
MUKX01000001
Betaproteobacteria
Chromobacterium violaceum [MUKX]
94381
94471
+
Ser
GGA
[ENA]
¡û
>W1712081980
NHOO01000013
Betaproteobacteria
Chromobacterium violaceum [NHOO]
65186
65096
-
Ser
GGA
[ENA]
¡û
>C171066276
CP017707
Betaproteobacteria
Chromobacterium vaccinii 21-1 [CP017707]
4608031
4608121
+
Ser
GGA
-
¡û
>C171066277
CP017707
Betaproteobacteria
Chromobacterium vaccinii 21-1 [CP017707]
4608174
4608264
+
Ser
GGA
-
¡û
>W131160277
AQWL01000007
Betaproteobacteria
Thiobacillus denitrificans DSM 12475 [AQWL]
90517
90607
+
Ser
GGA
[ENA]
¡û
>W131168099
ARDU01000012
Betaproteobacteria
Thiobacillus thioparus DSM 505 [ARDU]
45771
45681
-
Ser
GGA
[ENA]
¡û
>C007296
AE016825
Betaproteobacteria
Chromobacterium violaceum ATCC 12472 [AE016825]
1746117
1746207
+
Ser
GGA
[Ensembl]
¡û
>C025410
CP000116
Betaproteobacteria
Thiobacillus denitrificans ATCC 25259 [CP000116]
1621684
1621594
-
Ser
GGA
[Ensembl]
¡û
>WENV180310770
OBJT01022460
[OBJT] soil metagenome; soil
853
763
-
Ser
GGA
[ENA]
¢þ
>W141106165
AVPH01000266
Betaproteobacteria
Pseudogulbenkiania ferrooxidans EGD-HP2 [AVPH]
5068
5158
+
Ser
GGA
[ENA]
¡û
>W141106166
AVPH01000266
Betaproteobacteria
Pseudogulbenkiania ferrooxidans EGD-HP2 [AVPH]
5211
5301
+
Ser
GGA
[ENA]
¡û
>WENV181145116
OEHO01201051
[OEHO] metagenome; unknown
136
226
+
Ser
GGA
[ENA]
¢þ
>WENV181168644
OEIU01591274
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
184
94
-
Ser
GGA
[ENA]
¢þ
>WENV181835837
OGVI01025664
[OGVI] freshwater metagenome; freshwater
380
470
+
Ser
GGA
[ENA]
¢þ
>WENV183680426
ORMF010179759
[ORMF] groundwater metagenome; groundwater
152424
152334
-
Ser
GGA
[ENA]
¢þ
>WENV170007716
AMWB02152375
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
494
584
+
Ser
GGA
[ENA]
¢þ
>C181093185
CP024028
Betaproteobacteria
Chromobacterium violaceum CV1192 [CP024028]
1611138
1611228
+
Ser
GGA
-
¡û
>W09101565
AAFH01000001
Betaproteobacteria
Thiobacillus denitrificans ATCC 25259 [AAFH]
280522
280612
+
Ser
GGA
[ENA]
¡û
>C191199006
LR134182
Betaproteobacteria
Chromobacterium violaceum NCTC9695 [LR134182]
1721100
1721190
+
Ser
GGA
-
¡û
>W1910785452
MQNN01000015
Betaproteobacteria
Candidatus Dactylopiibacterium carminicum carminicum NFE1 [MQNN]
28398
28308
-
Ser
GGA
[ENA]
¡û
>W1911072266
NMRM01000010
Betaproteobacteria
Candidatus Dactylopiibacterium carminicum carminicum NFDO [NMRM]
28273
28183
-
Ser
GGA
[ENA]
¡û
>W1911072319
NMRN01000014
Betaproteobacteria
Candidatus Dactylopiibacterium carminicum carminicum NFDCM [NMRN]
28400
28310
-
Ser
GGA
[ENA]
¡û
>W1810756482
QPGB01000001
Betaproteobacteria
Parvibium lacunae KMB9 [QPGB]
810040
810130
+
Ser
GGA
[ENA]
¡û
>W1511484239
JWPW01000002
Betaproteobacteria
Chromobacterium violaceum GN5 [JWPW]
93783
93873
+
Ser
GGA
[ENA]
¡û
>W1511525799
JYGI01000006
Betaproteobacteria
Chromobacterium violaceum L_1B5_1 [JYGI]
143454
143364
-
Ser
GGA
[ENA]
¡û
>W1511640864
LDUM01000004
Betaproteobacteria
Chromobacterium violaceum LK6 [LDUM]
250059
249969
-
Ser
GGA
[ENA]
¡û
>W1511641426
LDUT01000015
Betaproteobacteria
Chromobacterium violaceum LK15 [LDUT]
94196
94286
+
Ser
GGA
[ENA]
¡û
>W1511641541
LDUU01000018
Betaproteobacteria
Chromobacterium violaceum LK17 [LDUU]
52423
52333
-
Ser
GGA
[ENA]
¡û
>W1511641789
LDUX01000010
Betaproteobacteria
Chromobacterium violaceum LK30 [LDUX]
179875
179785
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK