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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.16593 (103 seq.)
>W1711099822
LTKU01000097
Betaproteobacteria
Neisseria sp. HMSC064E01 [LTKU]
15543
15453
-
Ser
TGA
[ENA]
¡û
>W1711710955
MTAA01000005
Betaproteobacteria
Neisseria dumasiana 114725 [MTAA]
3930
3840
-
Ser
TGA
[ENA]
¡û
>W1711710992
MTAB01000003
Betaproteobacteria
Neisseria dumasiana 124861 [MTAB]
136879
136969
+
Ser
TGA
[ENA]
¡û
>W1711711037
MTAC01000001
Betaproteobacteria
Neisseria dumasiana 93087 [MTAC]
4118
4028
-
Ser
TGA
[ENA]
¡û
>W1711712000
MTBL01000004
Betaproteobacteria
Neisseria canis [MTBL]
74279
74369
+
Ser
TGA
[ENA]
¡û
>W1711712058
MTBM01000003
Betaproteobacteria
Neisseria zoodegmatis [MTBM]
212198
212288
+
Ser
TGA
[ENA]
¡û
>W1711712101
MTBN01000002
Betaproteobacteria
Neisseria animaloris [MTBN]
380024
380114
+
Ser
TGA
[ENA]
¡û
>WENV180733905
ODGZ01001304
[ODGZ] human metagenome; G_DNA_Supragingival plaque
8027
7937
-
Ser
TGA
[ENA]
¢þ
>WENV180751171
ODHS01024992
[ODHS] human metagenome; G_DNA_Supragingival plaque
91
1
-
Ser
TGA
[ENA]
¢þ
>WENV180791513
ODIU01006667
[ODIU] human metagenome; G_DNA_Buccal mucosa
231
321
+
Ser
TGA
[ENA]
¢þ
>WENV180810167
ODJK01141605
[ODJK] human metagenome; G_DNA_Subgingival plaque
87
-1
-
Ser
TGA
[ENA]
¢þ
>WENV180834444
ODKD01027097
[ODKD] human metagenome; G_DNA_Supragingival plaque
91
1
-
Ser
TGA
[ENA]
¢þ
>WENV180841953
ODKK01036776
[ODKK] human metagenome; G_DNA_Buccal mucosa
399
309
-
Ser
TGA
[ENA]
¢þ
>WENV180923795
ODTK01000184
[ODTK] human metagenome; G_DNA_Supragingival plaque
47352
47262
-
Ser
TGA
[ENA]
¢þ
>WENV180924421
ODTK01004733
[ODTK] human metagenome; G_DNA_Supragingival plaque
91
1
-
Ser
TGA
[ENA]
¢þ
>WENV180933521
ODTR01000394
[ODTR] human metagenome; G_DNA_Supragingival plaque
6429
6519
+
Ser
TGA
[ENA]
¢þ
>WENV180973150
ODUW01001540
[ODUW] human metagenome; G_DNA_Supragingival plaque
7006
7096
+
Ser
TGA
[ENA]
¢þ
>W141251785
CBQV010000842
Betaproteobacteria
Kingella kingae AA068 [CBQV]
16171
16261
+
Ser
TGA
[ENA]
¡û
>W141251829
CBQW010000847
Betaproteobacteria
Kingella kingae AA105 [CBQW]
16175
16265
+
Ser
TGA
[ENA]
¡û
>W141251875
CBQX010000563
Betaproteobacteria
Kingella kingae AA255 [CBQX]
16170
16260
+
Ser
TGA
[ENA]
¡û
>W141251921
CBQY010000218
Betaproteobacteria
Kingella kingae AA417 [CBQY]
16173
16263
+
Ser
TGA
[ENA]
¡û
>W141252066
CBRB010000905
Betaproteobacteria
Kingella kingae BB016 [CBRB]
16172
16262
+
Ser
TGA
[ENA]
¡û
>W141252110
CBRC010000895
Betaproteobacteria
Kingella kingae BB060 [CBRC]
16168
16258
+
Ser
TGA
[ENA]
¡û
>W141252156
CBRD010000489
Betaproteobacteria
Kingella kingae BB114 [CBRD]
16168
16258
+
Ser
TGA
[ENA]
¡û
>W141252357
CBRH010000993
Betaproteobacteria
Kingella kingae KK88 [CBRH]
16166
16256
+
Ser
TGA
[ENA]
¡û
>W141252537
CBRM010001067
Betaproteobacteria
Kingella kingae KK141 [CBRM]
16169
16259
+
Ser
TGA
[ENA]
¡û
>W141252582
CBRN010000290
Betaproteobacteria
Kingella kingae KK101 [CBRN]
16167
16257
+
Ser
TGA
[ENA]
¡û
>W141252680
CBRP010001038
Betaproteobacteria
Kingella kingae KK238 [CBRP]
16164
16254
+
Ser
TGA
[ENA]
¡û
>W141252722
CBRQ010001074
Betaproteobacteria
Kingella kingae KK93 [CBRQ]
16168
16258
+
Ser
TGA
[ENA]
¡û
>W141252766
CBRR010001035
Betaproteobacteria
Kingella kingae BB631 [CBRR]
16170
16260
+
Ser
TGA
[ENA]
¡û
>W141252806
CBRS010001045
Betaproteobacteria
Kingella kingae KK97 [CBRS]
11290
11380
+
Ser
TGA
[ENA]
¡û
>W141252849
CBRT010001097
Betaproteobacteria
Kingella kingae CC254 [CBRT]
16170
16260
+
Ser
TGA
[ENA]
¡û
>W141252891
CBRU010000990
Betaproteobacteria
Kingella kingae KK98 [CBRU]
16166
16256
+
Ser
TGA
[ENA]
¡û
>W141252937
CBRV010000999
Betaproteobacteria
Kingella kingae KK158 [CBRV]
16171
16261
+
Ser
TGA
[ENA]
¡û
>W141252981
CBRW010001101
Betaproteobacteria
Kingella kingae D2363 [CBRW]
16170
16260
+
Ser
TGA
[ENA]
¡û
>W141253025
CBRX010001034
Betaproteobacteria
Kingella kingae KK189 [CBRX]
16173
16263
+
Ser
TGA
[ENA]
¡û
>W141253070
CBRY010000785
Betaproteobacteria
Kingella kingae D7330 [CBRY]
16170
16260
+
Ser
TGA
[ENA]
¡û
>W141253116
CBRZ010000316
Betaproteobacteria
Kingella kingae KK260 [CBRZ]
11298
11388
+
Ser
TGA
[ENA]
¡û
>W141253161
CBSA010001453
Betaproteobacteria
Kingella kingae KK3 [CBSA]
16172
16262
+
Ser
TGA
[ENA]
¡û
>W141253203
CBSB010000641
Betaproteobacteria
Kingella kingae KK245 [CBSB]
16167
16257
+
Ser
TGA
[ENA]
¡û
>W141253249
CBSC010000240
Betaproteobacteria
Kingella kingae KK6 [CBSC]
16172
16262
+
Ser
TGA
[ENA]
¡û
>W141253345
CBSE010000976
Betaproteobacteria
Kingella kingae KK56 [CBSE]
2928
3018
+
Ser
TGA
[ENA]
¡û
>W141253391
CBSF010000140
Betaproteobacteria
Kingella kingae KK12 [CBSF]
16171
16261
+
Ser
TGA
[ENA]
¡û
>W141253489
CBSH010000159
Betaproteobacteria
Kingella kingae KK83 [CBSH]
16160
16250
+
Ser
TGA
[ENA]
¡û
>W141253531
CBSI010000154
Betaproteobacteria
Kingella kingae KK145 [CBSI]
125643
125733
+
Ser
TGA
[ENA]
¡û
>W141253579
CBSJ010000192
Betaproteobacteria
Kingella kingae KK156 [CBSJ]
61159
61249
+
Ser
TGA
[ENA]
¡û
>W141253626
CBSK010001007
Betaproteobacteria
Kingella kingae KK171 [CBSK]
16173
16263
+
Ser
TGA
[ENA]
¡û
>W141253668
CBSL010001136
Betaproteobacteria
Kingella kingae KK242 [CBSL]
16167
16257
+
Ser
TGA
[ENA]
¡û
>W141253714
CBSM010000311
Betaproteobacteria
Kingella kingae KK274 [CBSM]
16164
16254
+
Ser
TGA
[ENA]
¡û
>W141253760
CBSN010000240
Betaproteobacteria
Kingella kingae KK107 [CBSN]
16173
16263
+
Ser
TGA
[ENA]
¡û
>W141253805
CBSO010000537
Betaproteobacteria
Kingella kingae KK113 [CBSO]
16166
16256
+
Ser
TGA
[ENA]
¡û
>W141253849
CBSP010000700
Betaproteobacteria
Kingella kingae PV1748 [CBSP]
16163
16253
+
Ser
TGA
[ENA]
¡û
>W141253895
CBSQ010000631
Betaproteobacteria
Kingella kingae Vir5453 [CBSQ]
16172
16262
+
Ser
TGA
[ENA]
¡û
>W141253939
CBSR010001005
Betaproteobacteria
Kingella kingae KK60 [CBSR]
16169
16259
+
Ser
TGA
[ENA]
¡û
>W141253984
CBSS010001063
Betaproteobacteria
Kingella kingae KK128 [CBSS]
16169
16259
+
Ser
TGA
[ENA]
¡û
>W141254619
CBTD010001033
Betaproteobacteria
Kingella kingae KK75 [CBTD]
16170
16260
+
Ser
TGA
[ENA]
¡û
>W141254660
CBTE010001042
Betaproteobacteria
Kingella kingae KK190 [CBTE]
11296
11386
+
Ser
TGA
[ENA]
¡û
>W141254702
CBTF010000179
Betaproteobacteria
Kingella kingae KK199 [CBTF]
125650
125740
+
Ser
TGA
[ENA]
¡û
>W141254748
CBTG010000312
Betaproteobacteria
Kingella kingae KK411 [CBTG]
11261
11351
+
Ser
TGA
[ENA]
¡û
>W141266102
CCJT01000030
Betaproteobacteria
Kingella kingae [CCJT]
34842
34932
+
Ser
TGA
[ENA]
¡û
>W141267096
CCNJ01000072
Betaproteobacteria
Kingella negevensis Sch538 [CCNJ]
5370
5460
+
Ser
TGA
[ENA]
¡û
>C181037657
CP019448
Betaproteobacteria
Simonsiella muelleri ATCC 29453 [CP019448]
52269
52359
+
Ser
TGA
-
¡û
>C181212625
LS483426
Betaproteobacteria
Kingella kingae NCTC10529 [LS483426]
1984344
1984254
-
Ser
TGA
-
¡û
>C181224109
LT906434
Betaproteobacteria
Neisseria zoodegmatis NCTC12230 [LT906434]
1917286
1917376
+
Ser
TGA
-
¡û
>C191205894
LR134313
Betaproteobacteria
Neisseria canis NCTC10296 [LR134313]
1911518
1911608
+
Ser
TGA
-
¡û
>C191211082
LR134440
Betaproteobacteria
Neisseria animaloris NCTC12228 [LR134440]
545425
545515
+
Ser
TGA
-
¡û
>C191213672
LR134516
Betaproteobacteria
Neisseria animaloris NCTC12227 [LR134516]
819539
819449
-
Ser
TGA
-
¡û
>C191214474
LR134533
Betaproteobacteria
Neisseria weaveri NCTC12742 [LR134533]
1873832
1873742
-
Ser
TGA
-
¡û
>W1910230138
FOJK01000033
Betaproteobacteria
Kingella kingae ATCC 23330 [FOJK]
132211
132121
-
Ser
TGA
[ENA]
¡û
>W1910471750
FXBH01000015
Betaproteobacteria
Kingella negevensis Sch538 SW7208426 [FXBH]
91122
91212
+
Ser
TGA
[ENA]
¡û
>W1910496666
FXUV01000049
Betaproteobacteria
Kingella negevensis CHUV31 [FXUV]
7091
7181
+
Ser
TGA
[ENA]
¡û
>W1910496731
FXUV02000056
Betaproteobacteria
Kingella negevensis CHUV31 [FXUV]
7193
7283
+
Ser
TGA
[ENA]
¡û
>W1910551186
FZRL01000007
Betaproteobacteria
Kingella denitrificans [FZRL]
308
218
-
Ser
TGA
[ENA]
¡û
>W1910562099
FZZR01000002
Betaproteobacteria
Neisseria meningitidis [FZZR]
45425
45515
+
Ser
TGA
[ENA]
¡û
>W1911480134
OAFC01000121
Betaproteobacteria
Neisseria meningitidis [OAFC]
6477
6567
+
Ser
TGA
[ENA]
¡û
>W1911481964
OAGL01000020
Betaproteobacteria
Neisseria meningitidis [OAGL]
8547
8457
-
Ser
TGA
[ENA]
¡û
>W1911483065
OAHF01000005
Betaproteobacteria
Neisseria meningitidis [OAHF]
44184
44274
+
Ser
TGA
[ENA]
¡û
>W1911483835
OAHU01000001
Betaproteobacteria
Neisseria meningitidis [OAHU]
221192
221282
+
Ser
TGA
[ENA]
¡û
>W1911486550
OAJV01000188
Betaproteobacteria
Neisseria meningitidis [OAJV]
7155
7245
+
Ser
TGA
[ENA]
¡û
>W1911489262
OALW01000006
Betaproteobacteria
Neisseria meningitidis [OALW]
43098
43188
+
Ser
TGA
[ENA]
¡û
>W1810226991
POXA01000003
Betaproteobacteria
Neisseria wadsworthii C2008000421 [POXA]
59055
58965
-
Ser
TGA
[ENA]
¡û
>W1810227200
POXE01000003
Betaproteobacteria
Neisseria weaveri C2009028987 [POXE]
99189
99279
+
Ser
TGA
[ENA]
¡û
>W1810227262
POXF01000004
Betaproteobacteria
Neisseria weaveri C2009035459 [POXF]
103080
103170
+
Ser
TGA
[ENA]
¡û
>W1810227409
POXI01000002
Betaproteobacteria
Neisseria weaveri C2010015191 [POXI]
363365
363455
+
Ser
TGA
[ENA]
¡û
>W1810227877
POXR01000002
Betaproteobacteria
Neisseria animaloris C2012029644 [POXR]
494853
494943
+
Ser
TGA
[ENA]
¡û
>W1810228043
POXU01000004
Betaproteobacteria
Neisseria weaveri C2013013825 [POXU]
170532
170622
+
Ser
TGA
[ENA]
¡û
>W1810228435
POYC01000001
Betaproteobacteria
Neisseria animaloris C2015003240 [POYC]
342697
342787
+
Ser
TGA
[ENA]
¡û
>W10111213
ADCY01000014
Betaproteobacteria
Simonsiella muelleri ATCC 29453 [ADCY]
46295
46205
-
Ser
TGA
[ENA]
¡û
>W11114064
ADCY01000014
Betaproteobacteria
Simonsiella muelleri ATCC 29453 [ADCY]
46295
46205
-
Ser
TGA
[ENA]
¡û
>W11151285
AEWV01000040
Betaproteobacteria
Kingella denitrificans ATCC 33394 [AEWV]
60240
60150
-
Ser
TGA
[ENA]
¡û
>W11163381
AFHS01000046
Betaproteobacteria
Kingella kingae ATCC 23330 [AFHS]
36571
36661
+
Ser
TGA
[ENA]
¡û
>W11175920
AFWQ01000021
Betaproteobacteria
Neisseria weaveri LMG 5135 [AFWQ]
73692
73782
+
Ser
TGA
[ENA]
¡û
>W11175987
AFWR01000037
Betaproteobacteria
Neisseria weaveri ATCC 51223 [AFWR]
69424
69334
-
Ser
TGA
[ENA]
¡û
>W11177462
AGAY01000016
Betaproteobacteria
Neisseria shayeganii 871 [AGAY]
1436
1346
-
Ser
TGA
[ENA]
¡û
>W11177523
AGAZ01000058
Betaproteobacteria
Neisseria wadsworthii 9715 [AGAZ]
19098
19008
-
Ser
TGA
[ENA]
¡û
>C161106911
LN869922
Betaproteobacteria
Kingella kingae KWG1 [LN869922]
1952407
1952317
-
Ser
TGA
-
¡û
>C161109170
LT571436
Betaproteobacteria
Neisseria weaveri NCTC13585 [LT571436]
381426
381336
-
Ser
TGA
[Ensembl]
¡û
>W121060770
AJGB01000045
Betaproteobacteria
Kingella kingae PYKK081 [AJGB]
53749
53659
-
Ser
TGA
[ENA]
¡û
>W121110576
ALIJ01000043
Betaproteobacteria
Kingella kingae 11220434 [ALIJ]
125624
125714
+
Ser
TGA
[ENA]
¡û
>W1610617736
LGYH01000008
Betaproteobacteria
Neisseria sp. 83E34 [LGYH]
121809
121899
+
Ser
TGA
[ENA]
¡û
>W1610617969
LGZA01000002
Betaproteobacteria
Neisseria sp. 74A18 [LGZA]
59163
59253
+
Ser
TGA
[ENA]
¡û
>W1710743598
LGYH01000008
Betaproteobacteria
Neisseria sp. 83E34 [LGYH]
121809
121899
+
Ser
TGA
[ENA]
¡û
>W1710744144
LGZA01000002
Betaproteobacteria
Neisseria sp. 74A18 [LGZA]
59163
59253
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK