This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.166322 (33 seq.)
>W131038842
AMGI01000004
Mycoplasmatota
Spiroplasma melliferum IPMB4A [AMGI]
16427
16351
-
Met
CAT
[ENA]
¡û
>C171000182
CP001973
Mycoplasmatota
Spiroplasma eriocheiris CCTCC M 207170 [CP001973]
1086407
1086331
-
Met
CAT
-
¡û
>C171021643
CP013197
Mycoplasmatota
Spiroplasma citri R8-A2 [CP013197]
1283339
1283263
-
Met
CAT
-
¡û
>C171065473
CP017658
Mycoplasmatota
Spiroplasma sp. TU-14 [CP017658]
967400
967324
-
Met
CAT
-
¡û
>C171071492
CP018022
Mycoplasmatota
Spiroplasma sp. NBRC 100390 [CP018022]
967382
967306
-
Met
CAT
-
¡û
>WENV180217767
OBAR01004664
[OBAR] human gut metagenome; human gut
6300
6376
+
Ile2
CAT
[ENA]
¢þ
>WENV180341497
OBLI01142225
[OBLI] pig gut metagenome; faeces
104
28
-
Ile2
CAT
[ENA]
¢þ
>WENV180529456
OCHK01000043
[OCHK] human gut metagenome; human gut
14462
14538
+
Ile2
CAT
[ENA]
¢þ
>WENV180618717
OCQB01000427
[OCQB] human gut metagenome; human gut
9050
9126
+
Ile2
CAT
[ENA]
¢þ
>WENV181034388
ODXO01000033
[ODXO] human metagenome; G_DNA_Stool
22229
22305
+
Ile2
CAT
[ENA]
¢þ
>WENV181126658
OEFW01000080
[OEFW] human metagenome; G_DNA_Stool
22274
22350
+
Ile2
CAT
[ENA]
¢þ
>WENV181756186
OGQT01000247
[OGQT] human gut metagenome; faeces
26003
25927
-
Ile2
CAT
[ENA]
¢þ
>WENV182756857
OJRG01012910
[OJRG] human gut metagenome; stool sample
524
600
+
Ile2
CAT
[ENA]
¢þ
>WENV183154976
OLOR01030260
[OLOR] human gut metagenome; faeces
181
257
+
Ile2
CAT
[ENA]
¢þ
>WENV183310263
OLVO01000074
[OLVO] human gut metagenome; faeces
71350
71274
-
Ile2
CAT
[ENA]
¢þ
>WENV183329201
OLWB01000074
[OLWB] human gut metagenome; faeces
29413
29489
+
Ile2
CAT
[ENA]
¢þ
>C181195169
CP031088
Mycoplasmatota
Spiroplasma phoeniceum P40 [CP031088]
1443776
1443700
-
Met
CAT
-
¡û
>C191063201
CP029202
Mycoplasmatota
Spiroplasma melliferum AS576 [CP029202]
1037037
1036961
-
Met
CAT
-
¡û
>C141000721
CP002082
Mycoplasmatota
Spiroplasma mirum ATCC 29335 [CP002082]
886631
886555
-
Met
CAT
[Ensembl]
¡û
>W1810085660
PETF01000001
Mycoplasmatota
Spiroplasma poulsonii MSRO-SE [PETF]
63579
63503
-
Met
CAT
[ENA]
¡û
>W1810085691
PETG01000003
Mycoplasmatota
Spiroplasma poulsonii MSRO-H99 [PETG]
187873
187797
-
Met
CAT
[ENA]
¡û
>W1810115710
PHND01000001
Mycoplasmatota
Entomoplasma ellychniae ELCN-1 [PHND]
67721
67797
+
Met
CAT
[ENA]
¡û
>W1810115773
PHNF01000001
Mycoplasmatota
Mesoplasma corruscae ELCA-2 [PHNF]
511636
511712
+
Met
CAT
[ENA]
¡û
>W1810119998
PHSJ01000010
Mycoplasmatota
Spiroplasma melliferum CH-1 [PHSJ]
47092
47168
+
Met
CAT
[ENA]
¡û
>W1810339338
PUUH01000257
Mycoplasmatota
Spiroplasma sp. ChiS [PUUH]
3670
3594
-
Met
CAT
[ENA]
¡û
>C151011450
CP006720
Mycoplasmatota
Spiroplasma mirum ATCC 29335 SMCA [CP006720]
887285
887209
-
Met
CAT
[Ensembl]
¡û
>C151074051
CP010899
Mycoplasmatota
Spiroplasma kunkelii CR2-3x [CP010899]
340332
340408
+
Met
CAT
-
¡û
>C151087084
CP011855
Mycoplasmatota
Spiroplasma atrichopogonis GNAT3597 [CP011855]
914522
914446
-
Met
CAT
[Ensembl]
¡û
>C151087116
CP011856
Mycoplasmatota
Spiroplasma eriocheiris DSM 21848 [CP011856]
1087357
1087281
-
Met
CAT
[Ensembl]
¡û
>W1511404143
JTLV01000006
Mycoplasmatota
Spiroplasma poulsonii MSRO [JTLV]
120312
120236
-
Met
CAT
[ENA]
¡û
>W121008360
AGBZ01000001
Mycoplasmatota
Spiroplasma melliferum KC3 [AGBZ]
181689
181613
-
Met
CAT
[ENA]
¡û
>C131014723
CP005077
Mycoplasmatota
Spiroplasma chrysopicola DF-1 [CP005077]
842533
842457
-
Met
CAT
[Ensembl]
¡û
>C131014756
CP005078
Mycoplasmatota
Spiroplasma syrphidicola EA-1 [CP005078]
859352
859276
-
Met
CAT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK