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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.16634 (9 seq.)
>WENV016658
AACY020467783
Marine microbial communities from Global Ocean Sampling (GOS)
1697
1604
-
Ser
GCT
[ENA]
>WENV170624579
FUWD013183674
[FUWD] metagenome; unknown
18275
18366
+
Ser
GCT
[ENA]
¢þ
>WENV170632862
FUWD013388200
[FUWD] metagenome; unknown
18275
18366
+
Ser
GCT
[ENA]
¢þ
>W141805802
JPLS01000005
Alphaproteobacteria
alpha proteobacterium QL1 qinghai [JPLS]
7724
7815
+
Ser
GCT
[ENA]
¡û
>WENV039541
AACY022017209
Marine microbial communities from Global Ocean Sampling (GOS)
618
525
-
Ser
GCT
[ENA]
>WENV042828
AACY022268320
Marine microbial communities from Global Ocean Sampling (GOS)
96
3
-
Ser
GCT
[ENA]
>WENV058738
AACY023339959
Marine microbial communities from Global Ocean Sampling (GOS)
841
934
+
Ser
GCT
[ENA]
>W1610597247
LFEM01000004
Alphaproteobacteria
Alphaproteobacteria bacterium casp-alpha1 [LFEM]
25224
25315
+
Ser
GCT
[ENA]
¡û
>W1710718571
LFEM01000004
Alphaproteobacteria
Alphaproteobacteria bacterium casp-alpha1 [LFEM]
25224
25315
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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