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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.166388 (10 seq.)
>A171002938
CP003316
Thermoproteota
Pyrobaculum oguniense TE7 [CP003316]
276010
276086
+
Trp
CCA
-
¡û
>WENV180013798
FPIC01000157
[FPIC] soil metagenome; Soil
26869
26793
-
Trp
CCA
[ENA]
¢þ
>WENV180634871
OCRB01139106
[OCRB] metagenome; diffuse fluid
111
35
-
Trp
CCA
[ENA]
¢þ
>At0030
BA000002
Thermoproteota
Aeropyrum pernix K1 [BA000002]
403103
402990
-
Trp
CCA
[Ensembl]
¡û
>At0207
AE009441
Thermoproteota
Pyrobaculum aerophilum str. IM2 [AE009441]
1937685
1937761
+
Trp
CCA
[Ensembl]
¡û
>At0271
CP000660
Thermoproteota
Pyrobaculum arsenaticum DSM 13514 [CP000660]
1623365
1623289
-
Trp
CCA
[Ensembl]
¡û
>At0357
CP000504
Thermoproteota
Pyrobaculum islandicum DSM 4184 [CP000504]
456055
455979
-
Trp
CCA
[Ensembl]
¡û
>WENV170574164
FLYM01010181
[FLYM] hot springs metagenome; Sediment
11717
11793
+
Trp
CCA
[ENA]
¢þ
>W1911075130
NMUE01000076
Thermoproteota
Pyrobaculum aerophilum YKB31 [NMUE]
2112
2036
-
Trp
CCA
[ENA]
¡û
>W1911075148
NMUF01000025
Thermoproteota
Pyrobaculum aerophilum YKB32 [NMUF]
22485
22561
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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