This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.166404 (17 seq.)
>W1710889754
LNBC01000027
Alphaproteobacteria
Paracoccus aminovorans [LNBC]
285274
285350
+
Arg
CCG
[ENA]
¡û
>W131158925
AQUO01000002
Alphaproteobacteria
Paracoccus sp. N5 [AQUO]
865865
865789
-
Arg
CCG
[ENA]
¡û
>W1712104750
NIPZ01000043
Alphaproteobacteria
Paracoccus yeei [NIPZ]
24809
24733
-
Arg
CCG
[ENA]
¡û
>W141216623
AZVA01000005
Alphaproteobacteria
Paracoccus sp. J55 [AZVA]
143559
143635
+
Arg
CCG
[ENA]
¡û
>W141277353
JAEN01000009
Alphaproteobacteria
Paracoccus sp. J39 [JAEN]
9181
9257
+
Arg
CCG
[ENA]
¡û
>WENV170564880
CZPY01000027
[CZPY] metagenome; PAHs-polluted Soil
285274
285350
+
Arg
CCG
[ENA]
¢þ
>C181099790
CP024422
Alphaproteobacteria
Paracoccus yeei TT13 [CP024422]
3360566
3360490
-
Arg
CCG
-
¡û
>C181190859
CP030239
Alphaproteobacteria
Paracoccus mutanolyticus RSP-02 [CP030239]
226885
226809
-
Arg
CCG
-
¡û
>C181203419
LN832559
Alphaproteobacteria
Paracoccus aminovorans [LN832559]
1710210
1710134
-
Arg
CCG
-
¡û
>C191073602
CP031078
Alphaproteobacteria
Paracoccus yeei CCUG 32053 [CP031078]
1725617
1725541
-
Arg
CCG
-
¡û
>W141558851
JHWH01000001
Alphaproteobacteria
Paracoccus yeei ATCC BAA-599 [JHWH]
49776
49700
-
Arg
CCG
[ENA]
¡û
>W1810445006
PZKF01000028
Alphaproteobacteria
Phaeovulum veldkampii DSM 11550 [PZKF]
3102
3026
-
Arg
CCG
[ENA]
¡û
>W1810759479
QPJL01000010
Alphaproteobacteria
Paracoccus lutimaris CECT 8525 [QPJL]
24605
24529
-
Arg
CCG
[ENA]
¡û
>C11117038
CP002897
Alphaproteobacteria
Paracoccus denitrificans [CP002897]
1041313
1041389
+
Arg
CCG
[Ensembl]
¡û
>W121060019
AJFB01002558
Alphaproteobacteria
Paracoccus denitrificans SD1 [AJFB]
89
13
-
Arg
CCG
[ENA]
¡û
>W1610750132
LNBC01000027
Alphaproteobacteria
Paracoccus aminovorans [LNBC]
285274
285350
+
Arg
CCG
[ENA]
¡û
>W1710563596
FOPU01000025
Alphaproteobacteria
Paracoccus aminovorans [FOPU]
35597
35673
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK