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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.166468 (28 seq.)
>W131252489
CBML010000001
Bacillota
Clostridium chauvoei JF4335 [CBML]
479
555
+
Arg
TCG
[ENA]
¡û
>W1711579470
MNRT01000021
Bacillota
Clostridium sp. 29_15 [MNRT]
145691
145615
-
Arg
TCG
[ENA]
¡û
>C171131126
LT799839
Bacillota
Clostridium chauvoei JF4335 [LT799839]
2504316
2504392
+
Arg
TCG
-
¡û
>WENV180337797
OBLG01130498
[OBLG] human gut metagenome; human gut
211
287
+
Arg
TCG
[ENA]
¢þ
>W141042983
AMEZ01000077
Bacillota
Clostridium celatum DSM 1785 [AMEZ]
10999
10923
-
Arg
TCG
[ENA]
¡û
>WENV180495183
OCAA01011020
[OCAA] human gut metagenome; faeces
202
126
-
Arg
TCG
[ENA]
¢þ
>WENV181421352
OGCN01033987
[OGCN] human gut metagenome; human gut
701
777
+
Arg
TCG
[ENA]
¢þ
>WENV181551384
OGIN01007403
[OGIN] metagenome; Human gut stool
538
462
-
Arg
TCG
[ENA]
¢þ
>WENV181552544
OGIO01011234
[OGIO] metagenome; Human gut stool
1481
1557
+
Arg
TCG
[ENA]
¢þ
>WENV181553321
OGIQ01017519
[OGIQ] metagenome; Human gut stool
520
444
-
Arg
TCG
[ENA]
¢þ
>WENV181556345
OGIU01012968
[OGIU] metagenome; Human gut stool
1333
1257
-
Arg
TCG
[ENA]
¢þ
>WENV181558451
OGIX01000897
[OGIX] metagenome; Human gut stool
7309
7233
-
Arg
TCG
[ENA]
¢þ
>W141265585
CCFI01000017
Bacillota
Clostridium jeddahitimonense CL-2 [CCFI]
9697
9621
-
Arg
TCG
[ENA]
¡û
>W141267564
CCNP01000017
Bacillota
Clostridium jeddahitimonense CL-2 [CCNP]
9697
9621
-
Arg
TCG
[ENA]
¡û
>WENV183132903
OLOB01012040
[OLOB] human gut metagenome; faeces
39
115
+
Arg
TCG
[ENA]
¢þ
>WENV183234453
OLQV01039517
[OLQV] human gut metagenome; faeces
534
458
-
Arg
TCG
[ENA]
¢þ
>WENV183323391
OLVX01059756
[OLVX] human gut metagenome; faeces
627
551
-
Arg
TCG
[ENA]
¢þ
>WENV183327722
OLWA01001615
[OLWA] human gut metagenome; faeces
22382
22306
-
Arg
TCG
[ENA]
¢þ
>WENV183507279
OMGY01013708
[OMGY] human gut metagenome; human gut
1341
1417
+
Arg
TCG
[ENA]
¢þ
>WENV183751243
PPYE01006139
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1115
1191
+
Arg
TCG
[ENA]
¢þ
>WENV170979623
MTKZ01099229
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
113
189
+
Arg
TCG
[ENA]
¢þ
>C181031805
CP018624
Bacillota
Clostridium chauvoei DSM 7528 [CP018624]
120640
120564
-
Arg
TCG
-
¡û
>C181031978
CP018630
Bacillota
Clostridium chauvoei 12S0467 [CP018630]
2701464
2701540
+
Arg
TCG
-
¡û
>C191025651
CP023671
Bacillota
Clostridium septicum DSM 7534 [CP023671]
2163071
2162995
-
Arg
TCG
-
¡û
>C191051242
CP027286
Bacillota
Clostridium chauvoei SBP 07/09 [CP027286]
2500565
2500641
+
Arg
TCG
-
¡û
>C191123838
CP034358
Bacillota
Clostridium septicum VAT12 [CP034358]
959679
959603
-
Arg
TCG
-
¡û
>W1610507757
FLTT01000018
Bacillota
Clostridium septicum [FLTT]
61417
61341
-
Arg
TCG
[ENA]
¡û
>W1710499975
FLTT01000018
Bacillota
Clostridium septicum [FLTT]
61417
61341
-
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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