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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.166471 (15 seq.)
>WENV182546701
OJBP01001297
[OJBP] seawater metagenome; Sea water
8247
8322
+
Val
TAC
[ENA]
¢þ
>WENV182569883
OJFB01001303
[OJFB] seawater metagenome; Sea water
1807
1730
-
Val
TAC
[ENA]
¢þ
>WENV183617310
OOEE01166054
[OOEE] marine metagenome; sea ice
320
395
+
Val
TAC
[ENA]
¢þ
>WENV183617612
OOEG01016926
[OOEG] marine metagenome; sea ice
352
277
-
Val
TAC
[ENA]
¢þ
>WENV183627785
OOGL01046002
[OOGL] marine metagenome; sea ice
534
459
-
Val
TAC
[ENA]
¢þ
>WENV183713817
PDWI01154472
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1508
1583
+
Val
TAC
[ENA]
¢þ
>WENV183715701
PDWI01256979
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
898
975
+
Val
TAC
[ENA]
¢þ
>WENV183715817
PDWI01264753
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
129
204
+
Val
TAC
[ENA]
¢þ
>WENV170646655
JQIA01000940
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
5307
5230
-
Val
TAC
[ENA]
¢þ
>WENV171002688
NHNJ01135430
[NHNJ] marine metagenome; surface waters at 20 m depth at the end of the Scripps Institution of Oceanography (SIO) pier
6
83
+
Val
TAC
[ENA]
¢þ
>C181220993
LT899436
Bacteroidota
Tenacibaculum jejuense type strain: KCTC 22618 [LT899436]
1193161
1193236
+
Val
TAC
-
¡û
>W1910758263
MLJY01000015
Bacteroidota
Formosa algae KMM 8021 [MLJY]
17240
17315
+
Val
TAC
[ENA]
¡û
>W1910758264
MLJY01000015
Bacteroidota
Formosa algae KMM 8021 [MLJY]
17395
17470
+
Val
TAC
[ENA]
¡û
>W1810577090
QENZ01000003
Bacteroidota
Balneicella halophila DSM 28579 [QENZ]
288994
288919
-
Val
TAC
[ENA]
¡û
>C11111629
CP002528
Bacteroidota
Dokdonia sp. 4H-3-7-5 [CP002528]
682127
682050
-
Val
TAC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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