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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.16661 (59 seq.)
>W1710885562
LMXH01000004
Bacillota
Paenibacillus sp. FJAT-26967 [LMXH]
24201
24291
+
Ser
CGA
[ENA]
¡û
>W1711010070
LQRA01000053
Bacillota
Paenibacillus elgii [LQRA]
77411
77321
-
Ser
CGA
[ENA]
¡û
>W131176584
ARKE01000013
Bacillota
Paenibacillus daejeonensis DSM 15491 [ARKE]
38280
38370
+
Ser
CGA
[ENA]
¡û
>W1711904504
MZNT01000006
Bacillota
Paenibacillus sp. 32352 [MZNT]
407278
407188
-
Ser
CGA
[ENA]
¡û
>C171098069
CP019687
Bacillota
Paenibacillus larvae subsp. larvae ATCC 9545 [CP019687]
3239497
3239587
+
Ser
CGA
-
¡û
>C171099986
CP019794
Bacillota
Paenibacillus larvae subsp. pulvifaciens ATCC 13537 [CP019794]
2384896
2384806
-
Ser
CGA
-
¡û
>C171104944
CP020327
Bacillota
Paenibacillus larvae subsp. pulvifaciens CCM 38 [CP020327]
2048597
2048507
-
Ser
CGA
-
¡û
>C171109124
CP020557
Bacillota
Paenibacillus larvae subsp. pulvifaciens SAG 10367 [CP020557]
2245700
2245610
-
Ser
CGA
-
¡û
>W131000522
AGEN01000032
Bacillota
Paenibacillus sp. HGH0039 [AGEN]
93483
93393
-
Ser
CGA
[ENA]
¡û
>w017306
AARF01000151
Bacillota
Paenibacillus larvae subsp. larvae BRL-230010 [AARF]
526
439
-
Ser
CGA
[ENA]
¡û
>W141000971
ADFW01000001
Bacillota
Paenibacillus larvae subsp. larvae DSM 25719 [ADFW]
2459515
2459425
-
Ser
CGA
[ENA]
¡û
>W141237934
BBJT01000023
Bacillota
Paenibacillus chitinolyticus NBRC 15660 [BBJT]
34959
34869
-
Ser
CGA
[ENA]
¡û
>WENV183726981
PJTO01001213
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
3302
3212
-
Ser
CGA
[ENA]
¢þ
>WENV170586392
FUFK010404986
[FUFK] metagenome; unknown
835
745
-
Ser
CGA
[ENA]
¢þ
>WENV170708515
LNAP01090271
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
658
568
-
Ser
CGA
[ENA]
¢þ
>W141462583
JFHX01000069
Bacillota
Paenibacillus ehimensis A2 [JFHX]
24947
25037
+
Ser
CGA
[ENA]
¡û
>C181038472
CP019651
Bacillota
Paenibacillus larvae subsp. larvae ERIC_I [CP019651]
4274690
4274600
-
Ser
CGA
-
¡û
>C181038531
CP019652
Bacillota
Paenibacillus larvae subsp. larvae DSM 25430 DSM 25430; ERIC_II [CP019652]
4007696
4007606
-
Ser
CGA
-
¡û
>C181038615
CP019655
Bacillota
Paenibacillus larvae subsp. larvae Eric_III [CP019655]
4474865
4474776
-
Ser
CGA
-
¡û
>C181038692
CP019659
Bacillota
Paenibacillus larvae subsp. larvae Eric_IV [CP019659]
4254339
4254250
-
Ser
CGA
-
¡û
>C191044878
CP026520
Bacillota
Paenibacillus chitinolyticus KCCM 41400 [CP026520]
442103
442013
-
Ser
CGA
-
¡û
>W141702810
JMLS01000019
Bacillota
Paenibacillus sp. UNC451MF [JMLS]
164090
164000
-
Ser
CGA
[ENA]
¡û
>W141754345
JNVM01000041
Bacillota
Paenibacillus tyrfis MSt1 [JNVM]
24993
25083
+
Ser
CGA
[ENA]
¡û
>W1910067466
BFBX01000008
Bacillota
Paenibacillus sp. 598K [BFBX]
46834
46744
-
Ser
CGA
[ENA]
¡û
>W1910154656
BILX01000069
Bacillota
Paenibacillus ehimensis NBRC 15659 [BILX]
24949
25039
+
Ser
CGA
[ENA]
¡û
>W1910154814
BIMB01000037
Bacillota
Paenibacillus elgii NBRC 100335 [BIMB]
42150
42060
-
Ser
CGA
[ENA]
¡û
>W1910155080
BIMH01000003
Bacillota
Paenibacillus validus NBRC 15382 [BIMH]
201218
201128
-
Ser
CGA
[ENA]
¡û
>W1910175766
BJCS01000021
Bacillota
Paenibacillus naphthalenovorans 4B1 [BJCS]
30823
30733
-
Ser
CGA
[ENA]
¡û
>C141001416
CP003355
Bacillota
Paenibacillus larvae subsp. larvae DSM 25430 [CP003355]
4030776
4030686
-
Ser
CGA
[Ensembl]
¡û
>W1910505733
FYEP01000033
Bacillota
Paenibacillus tyrfis B69 [FYEP]
54262
54172
-
Ser
CGA
[ENA]
¡û
>W1910832016
MYFO01000030
Bacillota
Paenibacillus athensensis MEC069 [MYFO]
45322
45235
-
Ser
CGA
[ENA]
¡û
>W1910913935
NHRJ02000022
Bacillota
Paenibacillus xerothermodurans ATCC 27380 [NHRJ]
25485
25395
-
Ser
CGA
[ENA]
¡û
>W1911071730
NMQW01000029
Bacillota
Paenibacillus rigui JCM 16352 [NMQW]
24924
25014
+
Ser
CGA
[ENA]
¡û
>W1810402848
PYHP01000100
Bacillota
Paenibacillus elgii AC13 [PYHP]
25005
25095
+
Ser
CGA
[ENA]
¡û
>W1810701756
QMFB01000012
Bacillota
Paenibacillus contaminans CKOBP-6 [QMFB]
259607
259517
-
Ser
CGA
[ENA]
¡û
>C11117487
CP002869
Bacillota
Paenibacillus mucilaginosus KNP414 [CP002869]
8649937
8649847
-
Ser
CGA
[Ensembl]
¡û
>W11130165
ADZY01000002
Bacillota
Paenibacillus larvae subsp. larvae B-3650 [ADZY]
305456
305366
-
Ser
CGA
[ENA]
¡û
>W1511584982
LAWY01000002
Bacillota
Paenibacillus larvae MEX14 [LAWY]
167766
167676
-
Ser
CGA
[ENA]
¡û
>W11158467
AFDH01000052
Bacillota
Paenibacillus sp. HGF7 [AFDH]
94202
94112
-
Ser
CGA
[ENA]
¡û
>W11163545
AFHW01000171
Bacillota
Paenibacillus elgii B69 [AFHW]
995
905
-
Ser
CGA
[ENA]
¡û
>W11180965
AGIP01000003
Bacillota
Paenibacillus lactis 154 [AGIP]
519152
519062
-
Ser
CGA
[ENA]
¡û
>C121009379
CP003235
Bacillota
Paenibacillus mucilaginosus 3016 [CP003235]
8725160
8725070
-
Ser
CGA
[Ensembl]
¡û
>C121013040
CP003422
Bacillota
Paenibacillus mucilaginosus K02 [CP003422]
8756228
8756138
-
Ser
CGA
[Ensembl]
¡û
>C161058226
CP013652
Bacillota
Paenibacillus naphthalenovorans 32O-Y [CP013652]
4293647
4293737
+
Ser
CGA
[Ensembl]
¡û
>W1610048257
BBEA01000010
Bacillota
Paenibacillus sp. JCM 9795 [BBEA]
24798
24888
+
Ser
CGA
[ENA]
¡û
>W1610048335
BBEB01000011
Bacillota
Paenibacillus sp. JCM 9796 [BBEB]
24804
24894
+
Ser
CGA
[ENA]
¡û
>W1610048408
BBEC01000001
Bacillota
Paenibacillus sp. YK5 [BBEC]
24059
24149
+
Ser
CGA
[ENA]
¡û
>W1610543206
JTHN01000127
Bacillota
Paenibacillus sp. A3 [JTHN]
21314
21224
-
Ser
CGA
[ENA]
¡û
>W1610747488
LMXH01000004
Bacillota
Paenibacillus sp. FJAT-26967 [LMXH]
24201
24291
+
Ser
CGA
[ENA]
¡û
>W1610858590
LQRA01000053
Bacillota
Paenibacillus elgii [LQRA]
77411
77321
-
Ser
CGA
[ENA]
¡û
>W1710044767
BBEA01000010
Bacillota
Paenibacillus sp. JCM 9795 [BBEA]
24798
24888
+
Ser
CGA
[ENA]
¡û
>W1710044845
BBEB01000011
Bacillota
Paenibacillus sp. JCM 9796 [BBEB]
24804
24894
+
Ser
CGA
[ENA]
¡û
>W1710044918
BBEC01000001
Bacillota
Paenibacillus sp. YK5 [BBEC]
24059
24149
+
Ser
CGA
[ENA]
¡û
>W1710505540
FMTT01000040
Bacillota
Paenibacillus tianmuensis [FMTT]
25074
25164
+
Ser
CGA
[ENA]
¡û
>W1710511831
FMYY01000014
Bacillota
Paenibacillus sp. cl123 [FMYY]
150508
150418
-
Ser
CGA
[ENA]
¡û
>W1710518344
FNDY01000027
Bacillota
Paenibacillus naphthalenovorans [FNDY]
24235
24325
+
Ser
CGA
[ENA]
¡û
>W1710539278
FNVF01000004
Bacillota
Paenibacillus sp. UNC499MF [FNVF]
24183
24273
+
Ser
CGA
[ENA]
¡û
>W1710579760
FPIU01000016
Bacillota
Paenibacillus sp. UNCCL117 [FPIU]
24849
24939
+
Ser
CGA
[ENA]
¡û
>W1710646337
JTHN01000127
Bacillota
Paenibacillus sp. A3 [JTHN]
21314
21224
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK