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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.16663 (39 seq.)
>W131177578
ARKW01000084
Bacillota
Paenibacillus ginsengihumi DSM 21568 [ARKW]
1391
1480
+
Ser
GCT
[ENA]
¡û
>W131235914
AULX01000023
Bacillota
Paenibacillus pinihumi DSM 23905 [AULX]
148615
148525
-
Ser
GCT
[ENA]
¡û
>W141220245
AZXQ01000010
Bacillota
Cohnella panacarvi Gsoil 349 [AZXQ]
326480
326570
+
Ser
GCT
[ENA]
¡û
>W141251971
CBRA020000029
Bacillota
Paenibacillus sp. P22 [CBRA]
42664
42575
-
Ser
GCT
[ENA]
¡û
>W141251994
CBRA020000076
Bacillota
Paenibacillus sp. P22 [CBRA]
5987
6077
+
Ser
GCT
[ENA]
¡û
>WENV170705614
LNAP01000021
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
127213
127303
+
Ser
GCT
[ENA]
¢þ
>WENV170705960
LNAP01000716
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
158
248
+
Ser
GCT
[ENA]
¢þ
>C191007153
AP019308
Bacillota
Paenibacillus baekrokdamisoli KCTC 33723 [AP019308]
4084580
4084491
-
Ser
GCT
-
¡û
>C191143883
CP035492
Bacillota
Paenibacillus protaetiae FW100M-2 [CP035492]
3902294
3902384
+
Ser
GCT
-
¡û
>C191143899
CP035492
Bacillota
Paenibacillus protaetiae FW100M-2 [CP035492]
4119831
4119921
+
Ser
GCT
-
¡û
>W1910067502
BFBX01000176
Bacillota
Paenibacillus sp. 598K [BFBX]
15574
15484
-
Ser
GCT
[ENA]
¡û
>W1910831961
MYFO01000007
Bacillota
Paenibacillus athensensis MEC069 [MYFO]
160542
160631
+
Ser
GCT
[ENA]
¡û
>W1910831972
MYFO01000017
Bacillota
Paenibacillus athensensis MEC069 [MYFO]
181
271
+
Ser
GCT
[ENA]
¡û
>W1810675998
QKLR01000006
Bacillota
Cohnella sp. OV312 [QKLR]
120654
120744
+
Ser
GCT
[ENA]
¡û
>W1810679704
QKRB01000012
Bacillota
Paenibacillus sambharensis SMB1 [QKRB]
24137
24048
-
Ser
GCT
[ENA]
¡û
>W1810679749
QKRB01000051
Bacillota
Paenibacillus sambharensis SMB1 [QKRB]
134530
134440
-
Ser
GCT
[ENA]
¡û
>W1810701790
QMFB01000053
Bacillota
Paenibacillus contaminans CKOBP-6 [QMFB]
170
260
+
Ser
GCT
[ENA]
¡û
>C151075913
CP011058
Bacillota
Paenibacillus beijingensis DSM 24997 [CP011058]
3410686
3410776
+
Ser
GCT
[Ensembl]
¡û
>C151075934
CP011058
Bacillota
Paenibacillus beijingensis DSM 24997 [CP011058]
1188446
1188357
-
Ser
GCT
[Ensembl]
¡û
>W10126308
AEDD01000006
Bacillota
Paenibacillus curdlanolyticus YK9 [AEDD]
95446
95357
-
Ser
GCT
[ENA]
¡û
>W10126338
AEDD01000020
Bacillota
Paenibacillus curdlanolyticus YK9 [AEDD]
7773
7863
+
Ser
GCT
[ENA]
¡û
>C11117417
CP002869
Bacillota
Paenibacillus mucilaginosus KNP414 [CP002869]
263000
263089
+
Ser
GCT
[Ensembl]
¡û
>W11133569
AEDD01000006
Bacillota
Paenibacillus curdlanolyticus YK9 [AEDD]
95446
95357
-
Ser
GCT
[ENA]
¡û
>W11133599
AEDD01000020
Bacillota
Paenibacillus curdlanolyticus YK9 [AEDD]
7773
7863
+
Ser
GCT
[ENA]
¡û
>C121009266
CP003235
Bacillota
Paenibacillus mucilaginosus 3016 [CP003235]
184788
184877
+
Ser
GCT
[Ensembl]
¡û
>C121009291
CP003235
Bacillota
Paenibacillus mucilaginosus 3016 [CP003235]
261873
261962
+
Ser
GCT
[Ensembl]
¡û
>C121009313
CP003235
Bacillota
Paenibacillus mucilaginosus 3016 [CP003235]
673050
673139
+
Ser
GCT
[Ensembl]
¡û
>C121009423
CP003235
Bacillota
Paenibacillus mucilaginosus 3016 [CP003235]
7355562
7355473
-
Ser
GCT
[Ensembl]
¡û
>C121012929
CP003422
Bacillota
Paenibacillus mucilaginosus K02 [CP003422]
186792
186881
+
Ser
GCT
[Ensembl]
¡û
>C121012952
CP003422
Bacillota
Paenibacillus mucilaginosus K02 [CP003422]
263817
263906
+
Ser
GCT
[Ensembl]
¡û
>C121012978
CP003422
Bacillota
Paenibacillus mucilaginosus K02 [CP003422]
676184
676273
+
Ser
GCT
[Ensembl]
¡û
>C161034783
CP011388
Bacillota
Paenibacillus swuensis DY6 [CP011388]
2635857
2635947
+
Ser
GCT
[Ensembl]
¡û
>C161034792
CP011388
Bacillota
Paenibacillus swuensis DY6 [CP011388]
2999874
2999963
+
Ser
GCT
[Ensembl]
¡û
>C161034806
CP011388
Bacillota
Paenibacillus swuensis DY6 [CP011388]
1693894
1693805
-
Ser
GCT
[Ensembl]
¡û
>W1610047471
BBDI01000014
Bacillota
Paenibacillus pinihumi DSM 23905 = JCM 16419 [BBDI]
154
244
+
Ser
GCT
[ENA]
¡û
>W1710044076
BBDI01000014
Bacillota
Paenibacillus pinihumi DSM 23905 = JCM 16419 [BBDI]
154
244
+
Ser
GCT
[ENA]
¡û
>W1710511839
FMYY01000015
Bacillota
Paenibacillus sp. cl123 [FMYY]
117339
117428
+
Ser
GCT
[ENA]
¡û
>W1710556401
FOKE01000005
Bacillota
Cohnella sp. OV330 [FOKE]
407151
407061
-
Ser
GCT
[ENA]
¡û
>W1710579751
FPIU01000010
Bacillota
Paenibacillus sp. UNCCL117 [FPIU]
153342
153253
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK