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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.166644 (21 seq.)
>W131178002
ARLF01000001
Gammaproteobacteria
Thiomicrorhabdus arctica DSM 13458 [ARLF]
1570198
1570122
-
Trp
CCA
[ENA]
¡û
>W131186711
ARWI01000001
Gammaproteobacteria
Thiomicrorhabdus sp. Kp2 Kp2 [ARWI]
1111138
1111062
-
Trp
CCA
[ENA]
¡û
>W1711585472
MNZS01000066
Gammaproteobacteria
Thiomicrospira sp. CG2_30_44_34 [MNZS]
369
445
+
Trp
CCA
[ENA]
¡û
>C025340
CP000109
Gammaproteobacteria
Hydrogenovibrio crunogenus [CP000109]
330124
330200
+
Trp
CCA
[Ensembl]
¡û
>W141170933
AXZC01000004
Gammaproteobacteria
Thiomicrorhabdus chilensis DSM 12352 [AXZC]
1393162
1393086
-
Trp
CCA
[ENA]
¡û
>W141279818
JAGP01000001
Gammaproteobacteria
Hydrogenovibrio kuenenii DSM 12350 [JAGP]
279405
279481
+
Trp
CCA
[ENA]
¡û
>WENV170779674
LZQQ01001768
[LZQQ] oil field metagenome; sample BH-FW-20 from oil reservoir
179
255
+
Trp
CCA
[ENA]
¢þ
>WENV170779750
LZQR01000222
[LZQR] oil field metagenome; sample BH-FW-24 from oil reservoir
212
288
+
Trp
CCA
[ENA]
¢þ
>C191004366
AP018722
Gammaproteobacteria
Thiomicrorhabdus aquaedulcis HaS4 [AP018722]
342639
342715
+
Trp
CCA
-
¡û
>C191011669
CP014470
Gammaproteobacteria
Thiomicrospira sp. S5 [CP014470]
2536593
2536517
-
Trp
CCA
-
¡û
>C191084367
CP032096
Gammaproteobacteria
Hydrogenovibrio crunogenus SP-41 [CP032096]
330406
330482
+
Trp
CCA
-
¡û
>C191098435
CP033040
Gammaproteobacteria
Thiomicrorhabdus indica 13-15A [CP033040]
437036
437112
+
Trp
CCA
-
¡û
>C191134022
CP035033
Gammaproteobacteria
Hydrogenovibrio thermophilus JR-2 [CP035033]
428814
428890
+
Trp
CCA
-
¡û
>W141700059
JMIU01000001
Gammaproteobacteria
Hydrogenovibrio marinus [JMIU]
1131942
1131866
-
Trp
CCA
[ENA]
¡û
>W141733777
JNLD01000001
Gammaproteobacteria
Thiomicrorhabdus sp. Milos-T2 Milos-T2 [JNLD]
275102
275178
+
Trp
CCA
[ENA]
¡û
>W141776941
JOMK01000001
Gammaproteobacteria
Hydrogenovibrio sp. MA2-6 MA2-6 [JOMK]
2275961
2276037
+
Trp
CCA
[ENA]
¡û
>W141776995
JOML01000002
Gammaproteobacteria
Hydrogenovibrio marinus DSM 11271 [JOML]
1489276
1489200
-
Trp
CCA
[ENA]
¡û
>W141820251
JQMT01000001
Gammaproteobacteria
Hydrogenovibrio sp. Milos-T1 Milos-T1 [JQMT]
234397
234473
+
Trp
CCA
[ENA]
¡û
>W1810185547
PKGB01000013
Gammaproteobacteria
Hydrogenovibrio sp. SC-1 [PKGB]
44224
44300
+
Trp
CCA
[ENA]
¡û
>W1810406252
PYME01000038
Gammaproteobacteria
Photobacterium gaetbulicola DSM 26887 [PYME]
51827
51751
-
Trp
CCA
[ENA]
¡û
>C151007767
CP005974
Gammaproteobacteria
Photobacterium gaetbulicola Gung47 [CP005973, CP005974]
1016299
1016375
+
Trp
CCA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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