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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.166645 (25 seq.)
>W1710996590
LQBO01000001
Gammaproteobacteria
Thiomicrospira sp. XS5 [LQBO]
1213288
1213364
+
Arg
ACG
[ENA]
¡û
>W131178007
ARLF01000001
Gammaproteobacteria
Thiomicrorhabdus arctica DSM 13458 [ARLF]
1212652
1212576
-
Arg
ACG
[ENA]
¡û
>W131178008
ARLF01000001
Gammaproteobacteria
Thiomicrorhabdus arctica DSM 13458 [ARLF]
1212428
1212352
-
Arg
ACG
[ENA]
¡û
>W131186716
ARWI01000001
Gammaproteobacteria
Thiomicrorhabdus sp. Kp2 Kp2 [ARWI]
731121
731045
-
Arg
ACG
[ENA]
¡û
>W1711585443
MNZS01000006
Gammaproteobacteria
Thiomicrospira sp. CG2_30_44_34 [MNZS]
9138
9214
+
Arg
ACG
[ENA]
¡û
>C025346
CP000109
Gammaproteobacteria
Hydrogenovibrio crunogenus [CP000109]
839535
839611
+
Arg
ACG
[Ensembl]
¡û
>W141170921
AXZC01000004
Gammaproteobacteria
Thiomicrorhabdus chilensis DSM 12352 [AXZC]
35089
35165
+
Arg
ACG
[ENA]
¡û
>W141279827
JAGP01000001
Gammaproteobacteria
Hydrogenovibrio kuenenii DSM 12350 [JAGP]
821065
821141
+
Arg
ACG
[ENA]
¡û
>WENV170575709
FPHJ01000053
[FPHJ] hydrothermal vent metagenome genome assembly, contig: NODE_9.; water
3800
3724
-
Arg
ACG
[ENA]
¢þ
>WENV170779588
LZQQ01000073
[LZQQ] oil field metagenome; sample BH-FW-20 from oil reservoir
13971
13895
-
Arg
ACG
[ENA]
¢þ
>WENV170779712
LZQR01000038
[LZQR] oil field metagenome; sample BH-FW-24 from oil reservoir
7118
7042
-
Arg
ACG
[ENA]
¢þ
>C191004373
AP018722
Gammaproteobacteria
Thiomicrorhabdus aquaedulcis HaS4 [AP018722]
755668
755744
+
Arg
ACG
-
¡û
>C191011675
CP014470
Gammaproteobacteria
Thiomicrospira sp. S5 [CP014470]
2056499
2056423
-
Arg
ACG
-
¡û
>C191084373
CP032096
Gammaproteobacteria
Hydrogenovibrio crunogenus SP-41 [CP032096]
871319
871395
+
Arg
ACG
-
¡û
>C191098459
CP033040
Gammaproteobacteria
Thiomicrorhabdus indica 13-15A [CP033040]
2022368
2022292
-
Arg
ACG
-
¡û
>C191098460
CP033040
Gammaproteobacteria
Thiomicrorhabdus indica 13-15A [CP033040]
2022215
2022139
-
Arg
ACG
-
¡û
>C191134028
CP035033
Gammaproteobacteria
Hydrogenovibrio thermophilus JR-2 [CP035033]
929685
929761
+
Arg
ACG
-
¡û
>C191180145
CP040602
Gammaproteobacteria
Thiomicrorhabdus sediminis G1 [CP040602]
724527
724603
+
Arg
ACG
-
¡û
>W141700040
JMIU01000001
Gammaproteobacteria
Hydrogenovibrio marinus [JMIU]
87053
87129
+
Arg
ACG
[ENA]
¡û
>W141733782
JNLD01000003
Gammaproteobacteria
Thiomicrorhabdus sp. Milos-T2 Milos-T2 [JNLD]
276301
276377
+
Arg
ACG
[ENA]
¡û
>W141776923
JOMK01000001
Gammaproteobacteria
Hydrogenovibrio sp. MA2-6 MA2-6 [JOMK]
87138
87214
+
Arg
ACG
[ENA]
¡û
>W141776971
JOML01000002
Gammaproteobacteria
Hydrogenovibrio marinus DSM 11271 [JOML]
451459
451535
+
Arg
ACG
[ENA]
¡û
>W141820280
JQMT01000001
Gammaproteobacteria
Hydrogenovibrio sp. Milos-T1 Milos-T1 [JQMT]
1333196
1333120
-
Arg
ACG
[ENA]
¡û
>W1810185557
PKGB01000022
Gammaproteobacteria
Hydrogenovibrio sp. SC-1 [PKGB]
7615
7539
-
Arg
ACG
[ENA]
¡û
>W1610851247
LQBO01000001
Gammaproteobacteria
Thiomicrospira sp. XS5 [LQBO]
1213288
1213364
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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