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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.166663 (34 seq.)
>W1711297345
MADW01000027
Mycoplasmatota
Mycoplasmoides gallisepticum [MADW]
5579
5655
+
Met
CAT
[ENA]
¡û
>W1711299076
MAFU01000010
Mycoplasmatota
Mycoplasmoides gallisepticum [MAFU]
49572
49648
+
Met
CAT
[ENA]
¡û
>W1711299103
MAFV01000020
Mycoplasmatota
Mycoplasmoides gallisepticum [MAFV]
9373
9449
+
Met
CAT
[ENA]
¡û
>W1711299135
MAFW01000038
Mycoplasmatota
Mycoplasmoides gallisepticum [MAFW]
5588
5664
+
Met
CAT
[ENA]
¡û
>W1711300302
MAGQ01000010
Mycoplasmatota
Mycoplasmoides gallisepticum [MAGQ]
117447
117523
+
Met
CAT
[ENA]
¡û
>W1711300323
MAGR01000039
Mycoplasmatota
Mycoplasmoides gallisepticum [MAGR]
47337
47413
+
Met
CAT
[ENA]
¡û
>W1711313419
MATM01000047
Mycoplasmatota
Mycoplasmoides gallisepticum [MATM]
50985
50909
-
Met
CAT
[ENA]
¡û
>W1711313448
MATN01000036
Mycoplasmatota
Mycoplasmoides gallisepticum [MATN]
5982
6058
+
Met
CAT
[ENA]
¡û
>W131221300
AUAI01000020
Mycoplasmatota
Mycoplasmoides gallisepticum ATCC 19610 [AUAI]
5848
5772
-
Met
CAT
[ENA]
¡û
>C013451
AE015450
Mycoplasmatota
Mycoplasmoides gallisepticum str. R[low] [AE015450]
199069
199145
+
Met
CAT
[Ensembl]
¡û
>WENV181354578
OFMS01023733
[OFMS] human gut metagenome; human gut
16
92
+
fMet
CAT
[ENA]
¢þ
>W141275850
JADI01000006
Mycoplasmatota
[Mycoplasma] imitans ATCC 51306 [JADI]
52914
52838
-
Met
CAT
[ENA]
¡û
>C191056625
CP028146
Mycoplasmatota
Mycoplasmoides gallisepticum f99 lab strain [CP028146]
192520
192596
+
Met
CAT
-
¡û
>C191056654
CP028147
Mycoplasmatota
Mycoplasmoides gallisepticum f99 Avipro vaccine [CP028147]
192520
192596
+
Met
CAT
-
¡û
>C191224847
LS991952
Mycoplasmatota
Mycoplasmoides gallisepticum NCTC10115 [LS991952]
197271
197347
+
Met
CAT
-
¡û
>C141010538
CP006916
Mycoplasmatota
Mycoplasmoides gallisepticum S6 [CP006916]
203845
203921
+
Met
CAT
[Ensembl]
¡û
>C10109386
CP001873
Mycoplasmatota
Mycoplasmoides gallisepticum str. F [CP001873]
195678
195754
+
Met
CAT
[Ensembl]
¡û
>C10109415
CP001872
Mycoplasmatota
Mycoplasmoides gallisepticum str. R[high] [CP001872]
199070
199146
+
Met
CAT
[Ensembl]
¡û
>W11160693
AFFR01000004
Mycoplasmatota
Mycoplasmoides gallisepticum S6 [AFFR]
339176
339252
+
Met
CAT
[ENA]
¡û
>C121013989
CP003506
Mycoplasmatota
Mycoplasmoides gallisepticum VA94_7994-1-7P [CP003506]
219312
219388
+
Met
CAT
[Ensembl]
¡û
>C121014017
CP003507
Mycoplasmatota
Mycoplasmoides gallisepticum NC95_13295-2-2P [CP003507]
208595
208671
+
Met
CAT
[Ensembl]
¡û
>C121014045
CP003509
Mycoplasmatota
Mycoplasmoides gallisepticum NY01_2001.047-5-1P [CP003509]
208564
208640
+
Met
CAT
[Ensembl]
¡û
>C121014073
CP003510
Mycoplasmatota
Mycoplasmoides gallisepticum WI01_2001.043-13-2P [CP003510]
203228
203304
+
Met
CAT
[Ensembl]
¡û
>C121014101
CP003511
Mycoplasmatota
Mycoplasmoides gallisepticum NC06_2006.080-5-2P [CP003511]
203641
203717
+
Met
CAT
[Ensembl]
¡û
>C131003949
CP003508
Mycoplasmatota
Mycoplasmoides gallisepticum NC96_1596-4-2P [CP003508]
208591
208667
+
Met
CAT
[Ensembl]
¡û
>C131003977
CP003512
Mycoplasmatota
Mycoplasmoides gallisepticum CA06_2006.052-5-2P [CP003512]
203207
203283
+
Met
CAT
[Ensembl]
¡û
>C131004005
CP003513
Mycoplasmatota
Mycoplasmoides gallisepticum NC08_2008.031-4-3P [CP003513]
203642
203718
+
Met
CAT
[Ensembl]
¡û
>W1611052411
MAFU01000010
Mycoplasmatota
Mycoplasmoides gallisepticum [MAFU]
49572
49648
+
Met
CAT
[ENA]
¡û
>W1611052438
MAFV01000020
Mycoplasmatota
Mycoplasmoides gallisepticum [MAFV]
9373
9449
+
Met
CAT
[ENA]
¡û
>W1611052470
MAFW01000038
Mycoplasmatota
Mycoplasmoides gallisepticum [MAFW]
5588
5664
+
Met
CAT
[ENA]
¡û
>W1611052586
MAGQ01000010
Mycoplasmatota
Mycoplasmoides gallisepticum [MAGQ]
117447
117523
+
Met
CAT
[ENA]
¡û
>W1611052607
MAGR01000039
Mycoplasmatota
Mycoplasmoides gallisepticum [MAGR]
47337
47413
+
Met
CAT
[ENA]
¡û
>W1611058472
MATM01000047
Mycoplasmatota
Mycoplasmoides gallisepticum [MATM]
50985
50909
-
Met
CAT
[ENA]
¡û
>W1611058501
MATN01000036
Mycoplasmatota
Mycoplasmoides gallisepticum [MATN]
5982
6058
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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