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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.166670 (44 seq.)
>W1710786696
LJJB01000013
Bacillota
Brevibacillus choshinensis [LJJB]
295675
295751
+
Met
CAT
[ENA]
¡û
>W1710786703
LJJB01000013
Bacillota
Brevibacillus choshinensis [LJJB]
1661165
1661089
-
Met
CAT
[ENA]
¡û
>W1710876777
LMPN01000029
Bacillota
Brevibacillus sp. Leaf182 [LMPN]
183
259
+
Met
CAT
[ENA]
¡û
>W1711009666
LQQV01000063
Bacillota
Brevibacillus parabrevis [LQQV]
55700
55624
-
Met
CAT
[ENA]
¡û
>W1711009720
LQQV01000133
Bacillota
Brevibacillus parabrevis [LQQV]
148
224
+
Met
CAT
[ENA]
¡û
>W1711168647
LVYG01000013
Bacillota
Brevibacillus brevis [LVYG]
101
177
+
Met
CAT
[ENA]
¡û
>W1711799960
MXAR01000002
Bacillota
Brevibacillus brevis [MXAR]
4628
4704
+
Met
CAT
[ENA]
¡û
>W131086493
AOBR01000079
Bacillota
Brevibacillus agri BAB-2500 [AOBR]
62680
62604
-
Met
CAT
[ENA]
¡û
>W141093477
AVBJ01000018
Bacillota
Bacillus sp. NSP2.1 [AVBJ]
42588
42512
-
Met
CAT
[ENA]
¡û
>W141093546
AVBJ01000077
Bacillota
Bacillus sp. NSP2.1 [AVBJ]
98986
98910
-
Met
CAT
[ENA]
¡û
>W141185469
AYJU01000016
Bacillota
Brevibacillus panacihumi W25 [AYJU]
471970
471894
-
Met
CAT
[ENA]
¡û
>W141291585
JATL01000059
Bacillota
Brevibacillus agri 5·î2Æü [JATL]
35047
34971
-
Met
CAT
[ENA]
¡û
>W141291628
JATL01000137
Bacillota
Brevibacillus agri 5·î2Æü [JATL]
480
404
-
Met
CAT
[ENA]
¡û
>WENV170595448
FUFK011791211
[FUFK] metagenome; unknown
260
184
-
Met
CAT
[ENA]
¢þ
>C181030648
CP018145
Bacillota
Brevibacillus formosus NF2 [CP018145]
6033549
6033625
+
Met
CAT
-
¡û
>C181082030
CP023474
Bacillota
Brevibacillus brevis X23 [CP023474]
563493
563569
+
Met
CAT
-
¡û
>C181188419
CP030117
Bacillota
Brevibacillus brevis DZQ7 [CP030117]
551939
552015
+
Met
CAT
-
¡û
>C191041886
CP026363
Bacillota
Brevibacillus agri DSM 6348 [CP026363]
2297470
2297545
+
Met
CAT
-
¡û
>C191041896
CP026363
Bacillota
Brevibacillus agri DSM 6348 [CP026363]
5293495
5293419
-
Met
CAT
-
¡û
>C191207608
LR134338
Bacillota
Brevibacillus brevis NCTC2611 [LR134338]
5688031
5687955
-
Met
CAT
-
¡û
>W1910181735
BJMH01000011
Bacillota
Brevibacillus parabrevis NBRC 12334 [BJMH]
148939
148864
-
Met
CAT
[ENA]
¡û
>W1910183902
BJOD01000020
Bacillota
Brevibacillus agri NBRC 15538 [BJOD]
92517
92442
-
Met
CAT
[ENA]
¡û
>W1910184332
BJON01000016
Bacillota
Brevibacillus reuszeri NBRC 15719 [BJON]
80010
80086
+
Met
CAT
[ENA]
¡û
>C09101436
AP008955
Bacillota
Brevibacillus brevis NBRC 100599 [AP008955]
545315
545391
+
Met
CAT
[Ensembl]
¡û
>W1810001167
BEXF01000010
Bacillota
Brevibacillus reuszeri NIT02 [BEXF]
226728
226652
-
Met
CAT
[ENA]
¡û
>W1810001172
BEXF01000014
Bacillota
Brevibacillus reuszeri NIT02 [BEXF]
367
443
+
Met
CAT
[ENA]
¡û
>W1810391282
PXZL01000014
Bacillota
Brevibacillus formosus NRRL NRS-863 [PXZL]
20338
20262
-
Met
CAT
[ENA]
¡û
>W1810391453
PXZM01000068
Bacillota
Brevibacillus fortis NRRL NRS-1210 [PXZM]
19486
19410
-
Met
CAT
[ENA]
¡û
>W1810391518
PXZN01000019
Bacillota
Brevibacillus sp. NRRL NRS-603 [PXZN]
140
216
+
Met
CAT
[ENA]
¡û
>W1810391589
PXZO01000020
Bacillota
Brevibacillus porteri NRRL B-41110 [PXZO]
141
217
+
Met
CAT
[ENA]
¡û
>W1810787369
QRDR01000007
Bacillota
Brevibacillus brevis DSM 30 [QRDR]
388
464
+
Met
CAT
[ENA]
¡û
>W1511629728
LDCN01000006
Bacillota
Brevibacillus formosus DSM 9885 [LDCN]
323287
323211
-
Met
CAT
[ENA]
¡û
>W1511645804
LDZV01000001
Bacillota
Brevibacillus brevis DZQ7 [LDZV]
331
407
+
Met
CAT
[ENA]
¡û
>W1511699576
LGIQ01000007
Bacillota
Brevibacillus reuszeri DSM 9887 [LGIQ]
255533
255609
+
Met
CAT
[ENA]
¡û
>W121086595
AKKB01000095
Bacillota
Brevibacillus sp. CF112 [AKKB]
4946
5022
+
Met
CAT
[ENA]
¡û
>W1610650551
LJJB01000013
Bacillota
Brevibacillus choshinensis [LJJB]
295675
295751
+
Met
CAT
[ENA]
¡û
>W1610650558
LJJB01000013
Bacillota
Brevibacillus choshinensis [LJJB]
1661165
1661089
-
Met
CAT
[ENA]
¡û
>W1610739123
LMPN01000029
Bacillota
Brevibacillus sp. Leaf182 [LMPN]
183
259
+
Met
CAT
[ENA]
¡û
>W1610858186
LQQV01000063
Bacillota
Brevibacillus parabrevis [LQQV]
55700
55624
-
Met
CAT
[ENA]
¡û
>W1610858240
LQQV01000133
Bacillota
Brevibacillus parabrevis [LQQV]
148
224
+
Met
CAT
[ENA]
¡û
>W1610978442
LVYG01000013
Bacillota
Brevibacillus brevis [LVYG]
101
177
+
Met
CAT
[ENA]
¡û
>W1710081082
BDFB01000006
Bacillota
Brevibacillus brevis [BDFB]
545906
545830
-
Met
CAT
[ENA]
¡û
>W1710566109
FORT01000003
Bacillota
Brevibacillus centrosporus OK042 [FORT]
456129
456053
-
Met
CAT
[ENA]
¡û
>W1710566142
FORT01000004
Bacillota
Brevibacillus centrosporus OK042 [FORT]
193893
193969
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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