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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.166673 (55 seq.)
>C171131104
LT799839
Bacillota
Clostridium chauvoei JF4335 [LT799839]
43745
43821
+
Arg
ACG
-
¡û
>W131195004
ASRV01000092
Bacillota
Clostridium sartagoforme AAU1 [ASRV]
60222
60146
-
Arg
ACG
[ENA]
¡û
>W131252527
CBML010000007
Bacillota
Clostridium chauvoei JF4335 [CBML]
23429
23505
+
Arg
ACG
[ENA]
¡û
>W131044180
AMQH01000021
Bacillota
Clostridium tunisiense TJ [AMQH]
11375
11451
+
Arg
ACG
[ENA]
¡û
>WENV180180685
OAWL01000680
[OAWL] human gut metagenome; faeces
1154
1230
+
Arg
ACG
[ENA]
¢þ
>WENV180415544
OBVE01003673
[OBVE] human gut metagenome; faeces
658
734
+
Arg
ACG
[ENA]
¢þ
>WENV180421951
OBVS01000020
[OBVS] human gut metagenome; faeces
25084
25160
+
Arg
ACG
[ENA]
¢þ
>WENV180489059
OBZR01009276
[OBZR] human gut metagenome; faeces
128
52
-
Arg
ACG
[ENA]
¢þ
>WENV180761160
ODHZ01005416
[ODHZ] human metagenome; G_DNA_Stool
2338
2262
-
Arg
ACG
[ENA]
¢þ
>W141082949
AUPA01000080
Bacillota
Clostridium sp. BL8 [AUPA]
11956
12032
+
Arg
ACG
[ENA]
¡û
>W141083161
AUPH01003480
Bacillota
Clostridium beijerinckii AAU1 [AUPH]
178
102
-
Arg
ACG
[ENA]
¡û
>WENV181426300
OGCQ01004252
[OGCQ] human gut metagenome; human gut
8364
8288
-
Arg
ACG
[ENA]
¢þ
>WENV181805146
OGSH01000961
[OGSH] human gut metagenome; fecal sample 5 from infant 6
3430
3506
+
Arg
ACG
[ENA]
¢þ
>WENV181805901
OGSJ01001332
[OGSJ] human gut metagenome; fecal sample 6 from infant 6
3639
3715
+
Arg
ACG
[ENA]
¢þ
>WENV181807771
OGSQ01000121
[OGSQ] human gut metagenome; fecal sample 7 from infant 4
36351
36275
-
Arg
ACG
[ENA]
¢þ
>WENV181807923
OGSQ01001228
[OGSQ] human gut metagenome; fecal sample 7 from infant 4
1129
1205
+
Arg
ACG
[ENA]
¢þ
>WENV181809512
OGST01000379
[OGST] human gut metagenome; fecal sample 7 from infant 6
24427
24351
-
Arg
ACG
[ENA]
¢þ
>WENV181814852
OGTH01000627
[OGTH] human gut metagenome; fecal sample 4 from infant 6
3668
3744
+
Arg
ACG
[ENA]
¢þ
>WENV181817473
OGTN01000167
[OGTN] human gut metagenome; fecal sample 5 from infant 4
32988
32912
-
Arg
ACG
[ENA]
¢þ
>WENV181818991
OGTU01001822
[OGTU] human gut metagenome; fecal sample 6 from infant 4
7
83
+
Arg
ACG
[ENA]
¢þ
>WENV182405907
OIEX01000009
[OIEX] human gut metagenome; fecal sample from infant N3_177 DOL 45
24813
24889
+
Arg
ACG
[ENA]
¢þ
>W141239870
CAEV01000114
Bacillota
Clostridium senegalense JC122 [CAEV]
19580
19504
-
Arg
ACG
[ENA]
¡û
>W141261438
CCAT010000091
Bacillota
Clostridium ihumii anorexicamassiliense AP5 [CCAT]
10383
10459
+
Arg
ACG
[ENA]
¡û
>W141265778
CCFK01000013
Bacillota
Clostridium amazonitimonense LF2 [CCFK]
69953
69877
-
Arg
ACG
[ENA]
¡û
>W141267376
CCNN01000013
Bacillota
Clostridium amazonitimonense LF2 [CCNN]
69953
69877
-
Arg
ACG
[ENA]
¡û
>WENV182807226
OJVV01005052
[OJVV] human gut metagenome; human gut
613
689
+
Arg
ACG
[ENA]
¢þ
>WENV182832975
OKEP01005710
[OKEP] human gut metagenome; human gut
125
49
-
Arg
ACG
[ENA]
¢þ
>WENV182844370
OKIR01005459
[OKIR] human gut metagenome; human gut
742
818
+
Arg
ACG
[ENA]
¢þ
>WENV182963283
OKWQ01000048
[OKWQ] human gut metagenome; stool
25065
25141
+
Arg
ACG
[ENA]
¢þ
>WENV170563121
CZCB01010374
[CZCB] anaerobic digester metagenome; anaerobic digester
3526
3450
-
Arg
ACG
[ENA]
¢þ
>C181031725
CP018624
Bacillota
Clostridium chauvoei DSM 7528 [CP018624]
43331
43407
+
Arg
ACG
-
¡û
>C181031954
CP018630
Bacillota
Clostridium chauvoei 12S0467 [CP018630]
43335
43411
+
Arg
ACG
-
¡û
>C191012367
CP016786
Bacillota
Clostridium isatidis DSM 15098 [CP016786]
40574
40650
+
Arg
ACG
-
¡û
>C191025594
CP023671
Bacillota
Clostridium septicum DSM 7534 [CP023671]
1787864
1787940
+
Arg
ACG
-
¡û
>C191037334
CP025746
Bacillota
Clostridium manihotivorum CT4 [CP025746]
213789
213713
-
Arg
ACG
-
¡û
>C191051220
CP027286
Bacillota
Clostridium chauvoei SBP 07/09 [CP027286]
43745
43821
+
Arg
ACG
-
¡û
>C191123789
CP034358
Bacillota
Clostridium septicum VAT12 [CP034358]
563502
563578
+
Arg
ACG
-
¡û
>W09118966
ACDK01000084
Bacillota
Clostridium sp. 7_2_43FAA [ACDK]
5231
5307
+
Arg
ACG
[ENA]
¡û
>W1910213046
FMJL01000016
Bacillota
Clostridium sp. N3C [FMJL]
17653
17729
+
Arg
ACG
[ENA]
¡û
>W1910501405
FYAM01000010
Bacillota
Clostridium sp. BSD9I1 [FYAM]
9431
9507
+
Arg
ACG
[ENA]
¡û
>W1911491377
OAOD01000034
Bacillota
Clostridium peptidivorans [OAOD]
9211
9287
+
Arg
ACG
[ENA]
¡û
>W1911491436
OAOE01000031
Bacillota
Clostridium tertium [OAOE]
13374
13298
-
Arg
ACG
[ENA]
¡û
>W1911493933
OBJV01000006
Bacillota
Clostridium tertium [OBJV]
205441
205365
-
Arg
ACG
[ENA]
¡û
>W1810604958
QGMU01000025
Bacillota
Clostridium tertium Gcol.A43 [QGMU]
10312
10236
-
Arg
ACG
[ENA]
¡û
>W1810605030
QGMV01000017
Bacillota
Clostridium tertium Gcol.A2 [QGMV]
25155
25231
+
Arg
ACG
[ENA]
¡û
>W1510755120
CYSK01000010
Bacillota
Desnuesiella massiliensis mt10 [CYSK]
47347
47423
+
Arg
ACG
[ENA]
¡û
>W1511187027
JMFY01000032
Bacillota
Clostridium sp. HMP27 [JMFY]
15012
14936
-
Arg
ACG
[ENA]
¡û
>W1511595467
LBMX01000047
Bacillota
Clostridium sp. C8 [LBMX]
24503
24579
+
Arg
ACG
[ENA]
¡û
>W1610501252
FLKB01000008
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
38778
38854
+
Arg
ACG
[ENA]
¡û
>W1610507735
FLTT01000012
Bacillota
Clostridium septicum [FLTT]
18073
18149
+
Arg
ACG
[ENA]
¡û
>W1610604795
LFRG01000046
Bacillota
Clostridium sp. ATCC 25772 [LFRG]
19673
19597
-
Arg
ACG
[ENA]
¡û
>W1710494722
FLKB01000008
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
38778
38854
+
Arg
ACG
[ENA]
¡û
>W1710499953
FLTT01000012
Bacillota
Clostridium septicum [FLTT]
18073
18149
+
Arg
ACG
[ENA]
¡û
>W1710525372
FNJM01000006
Bacillota
Clostridium gasigenes [FNJM]
23203
23279
+
Arg
ACG
[ENA]
¡û
>W1710561863
FOOL01000024
Bacillota
Clostridium homopropionicum [FOOL]
27357
27281
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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