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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.166738 (41 seq.)
>W131043768
AMPS01000176
Alphaproteobacteria
Acidocella sp. MX-AZ02 [AMPS]
42814
42739
-
Arg
CCT
[ENA]
¡û
>C171074552
CP018190
Alphaproteobacteria
Granulibacter bethesdensis NIH5.1 [CP018190]
2631866
2631790
-
Arg
CCT
-
¡û
>C171074604
CP018191
Alphaproteobacteria
Granulibacter bethesdensis NIH9.1 [CP018191]
2659305
2659229
-
Arg
CCT
-
¡û
>C171074656
CP018192
Alphaproteobacteria
Granulibacter bethesdensis NIH6.1 [CP018192]
2615056
2614980
-
Arg
CCT
-
¡û
>C171074708
CP018193
Alphaproteobacteria
Granulibacter bethesdensis NIH7.1 [CP018193]
2631195
2631119
-
Arg
CCT
-
¡û
>C171074760
CP018194
Alphaproteobacteria
Granulibacter bethesdensis NIH8.1 [CP018194]
2659306
2659230
-
Arg
CCT
-
¡û
>C171074812
CP018195
Alphaproteobacteria
Granulibacter bethesdensis NIH1.4 [CP018195]
2630563
2630487
-
Arg
CCT
-
¡û
>W131225103
AUDH01000029
Alphaproteobacteria
Rubritepida flocculans DSM 14296 [AUDH]
25885
25961
+
Arg
CCT
[ENA]
¡û
>C000499
CP000697
Alphaproteobacteria
Acidiphilium cryptum JF-5 [CP000697]
3081907
3081831
-
Arg
CCT
[Ensembl]
¡û
>C009834
CP000394
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH1 [CP000394]
2630482
2630406
-
Arg
CCT
[Ensembl]
¡û
>WENV180018089
FSYC01000603
[FSYC] metagenome; soil
3968
4044
+
Arg
CCT
[ENA]
¢þ
>WENV180344343
OBLK01353690
[OBLK] soil metagenome; Clay
211
135
-
Arg
CCT
[ENA]
¢þ
>WENV180351704
OBLQ010089230
[OBLQ] soil metagenome; soil
953
1029
+
Arg
CCT
[ENA]
¢þ
>WENV181191713
OEPS010174948
[OEPS] soil metagenome; soil
452
379
-
Arg
CCT
[ENA]
¢þ
>W141222897
BACU01000485
Alphaproteobacteria
Azospirillum sp. B4 [BACU]
35181
35105
-
Arg
CCT
[ENA]
¡û
>WENV183683003
ORMF010515009
[ORMF] groundwater metagenome; groundwater
716
640
-
Arg
CCT
[ENA]
¢þ
>WENV170111969
CEGC01000032
[CEGC] microbial mat metagenome; grass silage
6426
6350
-
Arg
CCT
[ENA]
¢þ
>WENV170112096
CEGD01000369
[CEGD] microbial mat metagenome; grass silage
11487
11563
+
Arg
CCT
[ENA]
¢þ
>WENV170593908
FUFK011072133
[FUFK] metagenome; unknown
316
240
-
Arg
CCT
[ENA]
¢þ
>WENV170652564
JRYH01006458
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
4614
4538
-
Arg
CCT
[ENA]
¢þ
>W141462234
JFHO01000016
Alphaproteobacteria
Acidiphilium sp. JA12-A1 [JFHO]
37150
37074
-
Arg
CCT
[ENA]
¡û
>C181058309
CP022110
Alphaproteobacteria
Nitrospirillum amazonense CBAmc CBAmC [CP022110, CP022111, CP022112, CP022113]
154802
154726
-
Arg
CCT
-
¡û
>W141731640
JNJH01000023
Alphaproteobacteria
Acidiphilium angustum ATCC 35903 [JNJH]
57671
57595
-
Arg
CCT
[ENA]
¡û
>W09105126
AAOO01000014
Alphaproteobacteria
Acidiphilium cryptum JF-5 [AAOO]
83513
83589
+
Arg
CCT
[ENA]
¡û
>W141779200
JONP01000011
Alphaproteobacteria
Roseomonas aerilata DSM 19363 [JONP]
24387
24463
+
Arg
CCT
[ENA]
¡û
>W141803720
JPGX01000341
Alphaproteobacteria
Nitrospirillum amazonense CBAmc [JPGX]
1394
1470
+
Arg
CCT
[ENA]
¡û
>W1911802543
QYUK01000008
Alphaproteobacteria
Oleomonas cavernae K1W22B-8 [QYUK]
158897
158973
+
Arg
CCT
[ENA]
¡û
>W1810603349
QGLE01000002
Alphaproteobacteria
Zavarzinia aquatilis HR-AS [QGLE]
184359
184283
-
Arg
CCT
[ENA]
¡û
>W1810700583
QMDI01000006
Alphaproteobacteria
Elioraea thermophila YIM 72297 [QMDI]
609099
609023
-
Arg
CCT
[ENA]
¡û
>C151004024
CP003181
Alphaproteobacteria
Granulibacter bethesdensis NIH3.1 [CP003181]
2634013
2633937
-
Arg
CCT
[Ensembl]
¡û
>C151004083
CP003182
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH4 [CP003182]
2638189
2638113
-
Arg
CCT
[Ensembl]
¡û
>C151004135
CP003183
Alphaproteobacteria
Granulibacter bethesdensis NIH2.1 [CP003183]
2659436
2659360
-
Arg
CCT
[Ensembl]
¡û
>C11100957
AP012035
Alphaproteobacteria
Acidiphilium multivorum AIU301 [AP012035]
3435094
3435019
-
Arg
CCT
[Ensembl]
¡û
>W11157265
AFBX01000248
Alphaproteobacteria
Nitrospirillum amazonense Y2 [AFBX]
10878
10802
-
Arg
CCT
[ENA]
¡û
>W11170621
AFPR01000088
Alphaproteobacteria
Acidiphilium sp. PM [AFPR]
18574
18498
-
Arg
CCT
[ENA]
¡û
>C161073385
CP014525
Alphaproteobacteria
Haematospirillum jordaniae H5569 [CP014525]
428116
428040
-
Arg
CCT
[Ensembl]
¡û
>W1610041061
BANC01000112
Alphaproteobacteria
Acidocella aminolytica 101 = DSM 11237 [BANC]
31011
31087
+
Arg
CCT
[ENA]
¡û
>W1710038259
BANC01000112
Alphaproteobacteria
Acidocella aminolytica 101 = DSM 11237 [BANC]
31011
31087
+
Arg
CCT
[ENA]
¡û
>W1710584214
FQVJ01000038
Alphaproteobacteria
Acidocella aminolytica 101 = DSM 11237 [FQVJ]
2511
2435
-
Arg
CCT
[ENA]
¡û
>W1710588272
FQZF01000002
Alphaproteobacteria
Roseomonas rosea [FQZF]
383843
383767
-
Arg
CCT
[ENA]
¡û
>W1710597376
FTNE01000001
Alphaproteobacteria
Acidiphilium rubrum [FTNE]
239196
239120
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK