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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.166745 (5 seq.)
>WENV180372916
OBOI01155080
[OBOI] sediment metagenome; sediment
109
26
-
Leu
TAG
[ENA]
¢þ
>WENV183661024
ORJL010075413
[ORJL] groundwater metagenome; groundwater
39
122
+
Leu
TAG
[ENA]
¢þ
>WENV183666653
ORJL010571813
[ORJL] groundwater metagenome; groundwater
761
844
+
Leu
TAG
[ENA]
¢þ
>WENV183678533
ORJL011889636
[ORJL] groundwater metagenome; groundwater
39
122
+
Leu
TAG
[ENA]
¢þ
>WENV183692770
ORMF011971763
[ORMF] groundwater metagenome; groundwater
650
733
+
Leu
TAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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