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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.166884 (12 seq.)
>W1711406034
MGEZ01000004
Unclassified
Candidatus Uhrbacteria bacterium RIFOXYA2_FULL_41_8 [MGEZ]
12356
12280
-
Arg
CCT
[ENA]
¡û
>W1711406105
MGFB01000012
Unclassified
Candidatus Uhrbacteria bacterium RIFOXYB2_FULL_41_10 [MGFB]
12675
12599
-
Arg
CCT
[ENA]
¡û
>W1511603124
LBXC01000013
Unclassified
Candidatus Uhrbacteria bacterium GW2011_GWE1_39_46 bacterium GW2011_GWE1_39_46 [LBXC]
12606
12530
-
Arg
CCT
[ENA]
¡û
>W1511604645
LBZC01000011
Unclassified
Candidatus Uhrbacteria bacterium GW2011_GWC2_40_450 bacterium GW2011_GWC2_40_450 [LBZC]
13325
13401
+
Arg
CCT
[ENA]
¡û
>W1511605632
LCAM01000011
Unclassified
Candidatus Uhrbacteria bacterium GW2011_GWD2_41_121 bacterium GW2011_GWD2_41_121 [LCAM]
12742
12666
-
Arg
CCT
[ENA]
¡û
>W1511605829
LCAS01000013
Unclassified
Candidatus Uhrbacteria bacterium GW2011_GWD1_41_16 bacterium GW2011_GWD1_41_16 [LCAS]
12598
12522
-
Arg
CCT
[ENA]
¡û
>W1511605980
LCAW01000013
Unclassified
Candidatus Uhrbacteria bacterium GW2011_GWC1_41_20 bacterium GW2011_GWC1_41_20 [LCAW]
12598
12522
-
Arg
CCT
[ENA]
¡û
>W1511606285
LCBG01000011
Unclassified
Candidatus Uhrbacteria bacterium GW2011_GWB2_41_36 bacterium GW2011_GWB2_41_36 [LCBG]
12742
12666
-
Arg
CCT
[ENA]
¡û
>W1511606333
LCBI01000010
Unclassified
Candidatus Uhrbacteria bacterium GW2011_GWF2_41_40 bacterium GW2011_GWF2_41_40 [LCBI]
12742
12666
-
Arg
CCT
[ENA]
¡û
>W1511606377
LCBJ01000066
Unclassified
Candidatus Uhrbacteria bacterium GW2011_GWF2_41_430 bacterium GW2011_GWF2_41_430 [LCBJ]
9892
9968
+
Arg
CCT
[ENA]
¡û
>W1511606713
LCBV01000019
Unclassified
Candidatus Uhrbacteria bacterium GW2011_GWB1_41_7 bacterium GW2011_GWB1_41_7 [LCBV]
12598
12522
-
Arg
CCT
[ENA]
¡û
>W1511607992
LCDJ01000012
Unclassified
Candidatus Uhrbacteria bacterium GW2011_GWA2_42_220 bacterium GW2011_GWA2_42_220 [LCDJ]
13325
13401
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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