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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.166911 (7 seq.)
>A171004602
CP009502
Euryarchaeota
Methanosarcina thermophila CHTI-55 [CP009502]
1460800
1460726
-
Pro
CGG
-
¡û
>A171004739
CP009505
Euryarchaeota
Methanosarcina sp. MTP4 [CP009505]
3749307
3749233
-
Pro
CGG
-
¡û
>A178000291
CP003083
Euryarchaeota
Methanolobus psychrophilus R15 [CP003083]
871069
871165
+
Pro
CGG
-
¡û
>A178000328
CP003362
Euryarchaeota
Methanomethylovorans hollandica DSM 15978 [CP003362]
1632006
1631909
-
Pro
CGG
-
¡û
>A178000492
CP009518
Euryarchaeota
Methanococcoides methylutens MM1 [CP009518]
579762
579867
+
Pro
CGG
-
¡û
>WENV170008192
AMZC01004098
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
5900
5826
-
Pro
CGG
[ENA]
¢þ
>WENV170644592
JMBW01036761
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
114
40
-
Pro
CGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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