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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.166967 (6 seq.)
>W1711417555
MHGB01000020
Unclassified
Omnitrophica WOR_2 bacterium GWB2_45_9 [MHGB]
9753
9676
-
Pro
GGG
[ENA]
¡û
>W1711417897
MHHH01000021
Unclassified
Omnitrophica WOR_2 bacterium RIFOXYA2_FULL_45_12 [MHHH]
7990
7913
-
Pro
GGG
[ENA]
¡û
>W1711417968
MHHJ01000103
Unclassified
Omnitrophica WOR_2 bacterium RIFOXYB2_FULL_45_11 [MHHJ]
4433
4356
-
Pro
GGG
[ENA]
¡û
>WENV180252858
OBEQ010484603
[OBEQ] groundwater metagenome; groundwater
59497
59574
+
Pro
GGG
[ENA]
¢þ
>WENV183678575
ORJL011895444
[ORJL] groundwater metagenome; groundwater
1623
1700
+
Pro
GGG
[ENA]
¢þ
>WENV170668788
LAHQ01041591
[LAHQ] activated sludge metagenome; sample C-2; Sludge from acidogenic chamber (second chamber) of Anaerobic Baffled Reactor over
208
283
+
Pro
GGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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