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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.167144 (17 seq.)
>W131166478
ARCM01000004
Alphaproteobacteria
Ancylobacter sp. FA202 [ARCM]
861069
861145
+
Arg
TCT
[ENA]
¡û
>W131175704
ARJL01000003
Alphaproteobacteria
Xanthobacteraceae bacterium 501b [ARJL]
1364944
1364868
-
Arg
TCT
[ENA]
¡û
>W141733766
JNLC01000017
Alphaproteobacteria
Bosea sp. 117 [JNLC]
290831
290755
-
Arg
TCT
[ENA]
¡û
>W2010317618
CACSAS010000001
Alphaproteobacteria
Starkeya sp. HF14-78462 [CACSAS]
1289207
1289131
-
Arg
TCT
[ENA]
¡û
>W2010722802
JACICD010000003
Alphaproteobacteria
Angulomicrobium tetraedrale DSM 5895 [JACICD]
433861
433937
+
Arg
TCT
[ENA]
¡û
>W2011496717
RXIO01000003
Alphaproteobacteria
Ancylobacter aquaticus UV5 [RXIO]
237580
237504
-
Arg
TCT
[ENA]
¡û
>W2012088636
VMBP01000004
Alphaproteobacteria
Starkeya sp. 3C [VMBP]
365613
365689
+
Arg
TCT
[ENA]
¡û
>W2110590320
JAHBGC010000020
Alphaproteobacteria
Ancylobacter dichloromethanicus VKM B-2484 [JAHBGC]
920699
920623
-
Arg
TCT
[ENA]
¡û
>W2110590394
JAHBGE010000001
Alphaproteobacteria
Ancylobacter lacus VKM B-3280 [JAHBGE]
55976
55900
-
Arg
TCT
[ENA]
¡û
>W2110593071
JAHCQH010000014
Alphaproteobacteria
Ancylobacter sp. VKM B-3255 [JAHCQH]
430526
430450
-
Arg
TCT
[ENA]
¡û
>W10110069
ADBQ01000003
Alphaproteobacteria
Ancylobacter novellus DSM 506 [ADBQ]
368047
367971
-
Arg
TCT
[ENA]
¡û
>C231179899
CP083239
Alphaproteobacteria
Ancylobacter polymorphus ZM13 [CP083239]
3484293
3484217
-
Arg
TCT
-
¡û
>C241129926
CP048630
Alphaproteobacteria
Ancylobacter pratisalsi DSM 102029 [CP048630]
4512459
4512383
-
Arg
TCT
-
¡û
>W2310022817
BSFJ01000005
Alphaproteobacteria
Ancylobacter dichloromethanicus VKM B-2484 [BSFJ]
920699
920623
-
Arg
TCT
[ENA]
¡û
>C10112190
CP002026
Alphaproteobacteria
Ancylobacter novellus DSM 506 [CP002026]
1672656
1672732
+
Arg
TCT
[Ensembl]
¡û
>W11112506
ADBQ01000003
Alphaproteobacteria
Ancylobacter novellus DSM 506 [ADBQ]
368047
367971
-
Arg
TCT
[ENA]
¡û
>W1710505291
FMTP01000001
Alphaproteobacteria
Ancylobacter rudongensis [FMTP]
1081724
1081648
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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