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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.167198 (6 seq.)
>WENV180289453
OBIS01052957
[OBIS] soil metagenome; Alaskan Permafrost
154
79
-
Pro
GGG
[ENA]
¢þ
>WENV180591964
OCOV01148260
[OCOV] marine metagenome; ENVO:01000301
217
292
+
Pro
GGG
[ENA]
¢þ
>WENV181387217
OFRL01063583
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
304
379
+
Pro
GGG
[ENA]
¢þ
>WENV181416693
OGCL01127741
[OGCL] hot springs metagenome; Hot spring water
117
193
+
Pro
GGG
[ENA]
¢þ
>WENV033665
AACY021546449
Marine microbial communities from Global Ocean Sampling (GOS)
436
515
+
Pro
GGG
[ENA]
>WENV050999
AACY022921603
Marine microbial communities from Global Ocean Sampling (GOS)
451
530
+
Pro
GGG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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