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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.16810 (78 seq.)
>W1710864029
LMFO01000017
Bacillota
Paenibacillus sp. Root52 [LMFO]
35292
35202
-
Ser
CGA
[ENA]
¡û
>W1710872239
LMLV01000012
Bacillota
Paenibacillus sp. Leaf72 [LMLV]
28463
28553
+
Ser
CGA
[ENA]
¡û
>W1710879693
LMRV01000057
Bacillota
Paenibacillus sp. Soil522 [LMRV]
26098
26188
+
Ser
CGA
[ENA]
¡û
>W1711167484
LVWI01000077
Bacillota
Paenibacillus helianthi P26E [LVWI]
2309
2219
-
Ser
CGA
[ENA]
¡û
>W1711169248
LVYY01000021
Bacillota
Paenibacillus sp. P32E [LVYY]
39763
39673
-
Ser
CGA
[ENA]
¡û
>W1711252455
LYPA01000045
Bacillota
Paenibacillus oryzae [LYPA]
84204
84115
-
Ser
CGA
[ENA]
¡û
>W1711309553
MAQW01000032
Bacillota
Bacillus sp. FJAT-27264 [MAQW]
26881
26971
+
Ser
CGA
[ENA]
¡û
>W1711499700
MKQM01000067
Bacillota
Paenibacillus odorifer [MKQM]
369268
369178
-
Ser
CGA
[ENA]
¡û
>W1711499744
MKQN01000029
Bacillota
Paenibacillus odorifer [MKQN]
610411
610321
-
Ser
CGA
[ENA]
¡û
>W1711499836
MKQO01000065
Bacillota
Paenibacillus odorifer [MKQO]
590065
589975
-
Ser
CGA
[ENA]
¡û
>W1711499882
MKQP01000023
Bacillota
Paenibacillus odorifer [MKQP]
372691
372601
-
Ser
CGA
[ENA]
¡û
>W1711632787
MPTB01000021
Bacillota
Paenibacillus borealis [MPTB]
7070
7160
+
Ser
CGA
[ENA]
¡û
>W1711633269
MPTJ01000004
Bacillota
Paenibacillus odorifer [MPTJ]
372904
372814
-
Ser
CGA
[ENA]
¡û
>W1711633520
MPTN01000003
Bacillota
Paenibacillus odorifer [MPTN]
457895
457805
-
Ser
CGA
[ENA]
¡û
>W1711633583
MPTO01000001
Bacillota
Paenibacillus odorifer [MPTO]
357598
357508
-
Ser
CGA
[ENA]
¡û
>W1711633650
MPTP01000001
Bacillota
Paenibacillus odorifer [MPTP]
569710
569620
-
Ser
CGA
[ENA]
¡û
>W1711633716
MPTQ01000003
Bacillota
Paenibacillus odorifer [MPTQ]
26220
26310
+
Ser
CGA
[ENA]
¡û
>W1711633911
MPTT01000004
Bacillota
Paenibacillus odorifer [MPTT]
228362
228272
-
Ser
CGA
[ENA]
¡û
>W1711636466
MPVM01000017
Bacillota
Paenibacillus odorifer [MPVM]
26591
26681
+
Ser
CGA
[ENA]
¡û
>W1711677327
MRTL01000005
Bacillota
Paenibacillus sp. FSL H8-0259 [MRTL]
359392
359302
-
Ser
CGA
[ENA]
¡û
>C171123212
CP021780
Bacillota
Paenibacillus donghaensis KCTC 13049 [CP021780]
7047652
7047563
-
Ser
CGA
-
¡û
>W141022522
AJTY01000010
Bacillota
Paenibacillus sonchi X19-5 [AJTY]
29756
29666
-
Ser
CGA
[ENA]
¡û
>W141072982
ASQQ01000139
Bacillota
Paenibacillus durus ATCC 35681 [ASQQ]
26157
26247
+
Ser
CGA
[ENA]
¡û
>W141073418
ASSD01000425
Bacillota
Paenibacillus zanthoxyli JH29 [ASSD]
2113
2023
-
Ser
CGA
[ENA]
¡û
>W08007932
ABKS01000005
Bacillota
Paenibacillus sp. JDR-2 [ABKS]
24895
24985
+
Ser
CGA
[ENA]
¡û
>W141251574
CBQR020000103
Bacillota
Gorillibacterium massiliense G5 [CBQR]
21745
21655
-
Ser
CGA
[ENA]
¡û
>WENV183734800
PJUA01000018
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
241309
241220
-
Ser
CGA
[ENA]
¢þ
>WENV170700314
LIDZ01011925
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
1291
1201
-
Ser
CGA
[ENA]
¢þ
>WENV170707911
LNAP01039339
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
34
124
+
Ser
CGA
[ENA]
¢þ
>C181021392
CP016808
Bacillota
Paenibacillus sp. BIHB 4019 [CP016808]
2147536
2147626
+
Ser
CGA
-
¡û
>C181054834
CP021965
Bacillota
Paenibacillus odorifer CBA7130 [CP021965]
6788127
6788037
-
Ser
CGA
-
¡û
>C181182409
CP029639
Bacillota
Paenibacillus sp. DCT19 [CP029639]
6647164
6647074
-
Ser
CGA
-
¡û
>C191125254
CP034437
Bacillota
Paenibacillus albus 18JY67-1 [CP034437]
776965
776875
-
Ser
CGA
-
¡û
>C191143867
CP035492
Bacillota
Paenibacillus protaetiae FW100M-2 [CP035492]
3244977
3245067
+
Ser
CGA
-
¡û
>W1910018474
BDQX01000278
Bacillota
Paenibacillus agaridevorans T-3040 [BDQX]
475
565
+
Ser
CGA
[ENA]
¡û
>W1910154679
BILY01000034
Bacillota
Paenibacillus glycanilyticus NBRC 16618 [BILY]
24943
25033
+
Ser
CGA
[ENA]
¡û
>W1910154711
BILZ01000003
Bacillota
Paenibacillus kobensis NBRC 15729 [BILZ]
219597
219507
-
Ser
CGA
[ENA]
¡û
>W1910154941
BIME01000003
Bacillota
Paenibacillus illinoisensis NBRC 15959 [BIME]
600255
600165
-
Ser
CGA
[ENA]
¡û
>C09108224
CP001656
Bacillota
Paenibacillus sp. JDR-2 [CP001656]
7171281
7171191
-
Ser
CGA
[Ensembl]
¡û
>W1910940561
NJAR01000014
Bacillota
Paenibacillus castaneae DSM 19417 [NJAR]
430929
430839
-
Ser
CGA
[ENA]
¡û
>W1911069582
NMOK01000008
Bacillota
Paenibacillus sp. ATY16 [NMOK]
25101
25191
+
Ser
CGA
[ENA]
¡û
>W1911143973
NPBI01000050
Bacillota
Paenibacillus sp. 7516 [NPBI]
3289
3199
-
Ser
CGA
[ENA]
¡û
>W1911779691
QXQA01000025
Bacillota
Paenibacillus nanensis DSM 22867 [QXQA]
25461
25551
+
Ser
CGA
[ENA]
¡û
>W1911779776
QXQB01000011
Bacillota
Paenibacillus pinisoli JCM 19203 [QXQB]
27000
27090
+
Ser
CGA
[ENA]
¡û
>W1810271913
PRLG01000006
Bacillota
Paenibacillus illinoisensis E3 [PRLG]
31452
31542
+
Ser
CGA
[ENA]
¡û
>W1810608850
QGTQ01000001
Bacillota
Paenibacillus cellulosilyticus CECT 5696 [QGTQ]
628285
628195
-
Ser
CGA
[ENA]
¡û
>W1810671510
QJSW01000007
Bacillota
Paenibacillus barcinonensis CECT 7022 [QJSW]
31411
31501
+
Ser
CGA
[ENA]
¡û
>W1810684124
QKWW01000023
Bacillota
Paenibacillus silvae NC2 [QKWW]
97622
97532
-
Ser
CGA
[ENA]
¡û
>W1810697203
QLUW01000005
Bacillota
Paenibacillus montanisoli RA17 [QLUW]
437116
437026
-
Ser
CGA
[ENA]
¡û
>W1810759078
QPJD01000014
Bacillota
Paenibacillus prosopidis CECT 7506 [QPJD]
25737
25827
+
Ser
CGA
[ENA]
¡û
>W1810860962
QTTN01000062
Bacillota
Paenibacillus taihuensis CGMCC 1.10966 [QTTN]
2572
2482
-
Ser
CGA
[ENA]
¡û
>C151005579
CP004078
Bacillota
Paenibacillus sabinae T27 [CP004078]
5256029
5255939
-
Ser
CGA
[Ensembl]
¡û
>C151047722
CP009282
Bacillota
Paenibacillus sp. FSL R5-0912 [CP009282]
7703697
7703607
-
Ser
CGA
[Ensembl]
¡û
>C151048066
CP009286
Bacillota
Paenibacillus stellifer DSM 14472 [CP009286]
5644518
5644428
-
Ser
CGA
[Ensembl]
¡û
>C151048149
CP009287
Bacillota
Paenibacillus graminis DSM 15220 [CP009287]
7151881
7151791
-
Ser
CGA
[Ensembl]
¡û
>C151048237
CP009288
Bacillota
Paenibacillus durus DSM 1735 [CP009288]
6023727
6023637
-
Ser
CGA
[Ensembl]
¡û
>C151048238
CP009288
Bacillota
Paenibacillus durus DSM 1735 [CP009288]
6019957
6019867
-
Ser
CGA
[Ensembl]
¡û
>C151050845
CP009428
Bacillota
Paenibacillus odorifer DSM 15391 [CP009428]
6798136
6798046
-
Ser
CGA
[Ensembl]
¡û
>C151077288
CP011114
Bacillota
Paenibacillus durus ATCC 35681 [CP011114]
4740333
4740243
-
Ser
CGA
[Ensembl]
¡û
>C151077289
CP011114
Bacillota
Paenibacillus durus ATCC 35681 [CP011114]
4736563
4736473
-
Ser
CGA
[Ensembl]
¡û
>W1511320797
JQCR01000002
Bacillota
Paenibacillus wynnii DSM 18334 [JQCR]
2034051
2034141
+
Ser
CGA
[ENA]
¡û
>W1511577217
LAQO01000053
Bacillota
Paenibacillus algorifonticola XJ259 [LAQO]
26279
26369
+
Ser
CGA
[ENA]
¡û
>W1610632623
LIPY01000121
Bacillota
Paenibacillus jilunlii [LIPY]
316772
316682
-
Ser
CGA
[ENA]
¡û
>W1610726375
LMFO01000017
Bacillota
Paenibacillus sp. Root52 [LMFO]
35292
35202
-
Ser
CGA
[ENA]
¡û
>W1610734585
LMLV01000012
Bacillota
Paenibacillus sp. Leaf72 [LMLV]
28463
28553
+
Ser
CGA
[ENA]
¡û
>W1610742039
LMRV01000057
Bacillota
Paenibacillus sp. Soil522 [LMRV]
26098
26188
+
Ser
CGA
[ENA]
¡û
>W1611017243
LYPA01000045
Bacillota
Paenibacillus oryzae [LYPA]
84204
84115
-
Ser
CGA
[ENA]
¡û
>W1611057210
MAQW01000032
Bacillota
Bacillus sp. FJAT-27264 [MAQW]
26881
26971
+
Ser
CGA
[ENA]
¡û
>W1710507729
FMVM01000015
Bacillota
Paenibacillus polysaccharolyticus BL9 [FMVM]
180051
179961
-
Ser
CGA
[ENA]
¡û
>W1710521577
FNGM01000013
Bacillota
Paenibacillus jilunlii [FNGM]
26753
26843
+
Ser
CGA
[ENA]
¡û
>W1710546661
FOCJ01000003
Bacillota
Paenibacillus sp. OV219 [FOCJ]
24740
24830
+
Ser
CGA
[ENA]
¡û
>W1710547850
FODH01000014
Bacillota
Paenibacillus sophorae [FODH]
126783
126693
-
Ser
CGA
[ENA]
¡û
>W1710554402
FOIK01000003
Bacillota
Paenibacillus sp. NFR01 [FOIK]
26027
26117
+
Ser
CGA
[ENA]
¡û
>W1710559610
FOMT01000006
Bacillota
Paenibacillus catalpae [FOMT]
25159
25249
+
Ser
CGA
[ENA]
¡û
>W1710560591
FONN01000007
Bacillota
Paenibacillus algorifonticola [FONN]
210179
210089
-
Ser
CGA
[ENA]
¡û
>W1710565399
FORE01000025
Bacillota
Paenibacillus sp. UNC496MF [FORE]
24611
24521
-
Ser
CGA
[ENA]
¡û
>W1710705099
LCZJ02000037
Bacillota
Paenibacillus etheri [LCZJ]
591059
590969
-
Ser
CGA
[ENA]
¡û
>W1710767009
LIPY01000121
Bacillota
Paenibacillus jilunlii [LIPY]
316772
316682
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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