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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.16843 (49 seq.)
>W1710934473
LOJI01000035
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
247322
247232
-
Ser
GGA
[ENA]
¡û
>W1710934495
LOJJ01000003
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
34495
34585
+
Ser
GGA
[ENA]
¡û
>W1710990954
LPXH01000035
Betaproteobacteria
Comamonas kerstersii 12322-1 [LPXH]
57110
57200
+
Ser
GGA
[ENA]
¡û
>W1710990955
LPXH01000035
Betaproteobacteria
Comamonas kerstersii 12322-1 [LPXH]
72924
73014
+
Ser
GGA
[ENA]
¡û
>W1711301913
MAIK01000383
Betaproteobacteria
Polynucleobacter necessarius [MAIK]
961
871
-
Ser
GGA
[ENA]
¡û
>W1711628361
MPOE01000008
Betaproteobacteria
Comamonas kerstersii 202149 [MPOE]
90914
91004
+
Ser
GGA
[ENA]
¡û
>W1711628362
MPOE01000008
Betaproteobacteria
Comamonas kerstersii 202149 [MPOE]
106729
106819
+
Ser
GGA
[ENA]
¡û
>W1711628442
MPOF01000013
Betaproteobacteria
Comamonas kerstersii 121606 [MPOF]
13694
13784
+
Ser
GGA
[ENA]
¡û
>W1711628461
MPOF01000017
Betaproteobacteria
Comamonas kerstersii 121606 [MPOF]
47293
47383
+
Ser
GGA
[ENA]
¡û
>W1711932811
NAIA01000003
Betaproteobacteria
Polynucleobacter hirudinilacicola MWH-EgelM1-30-B4 [NAIA]
1047395
1047305
-
Ser
GGA
[ENA]
¡û
>W1712077071
NGUP01000004
Betaproteobacteria
Polynucleobacter campilacus MWH-Feld-100 [NGUP]
44519
44429
-
Ser
GGA
[ENA]
¡û
>C171104852
CP020121
Betaproteobacteria
Comamonas kerstersii 8943 [CP020121]
3323584
3323674
+
Ser
GGA
-
¡û
>C171104853
CP020121
Betaproteobacteria
Comamonas kerstersii 8943 [CP020121]
3339430
3339520
+
Ser
GGA
-
¡û
>W131214605
ATUI01000001
Betaproteobacteria
Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 [ATUI]
96545
96455
-
Ser
GGA
[ENA]
¡û
>WENV180022993
FTHB01000384
[FTHB] metagenome; soil
3937
4027
+
Ser
GGA
[ENA]
¢þ
>WENV180393063
OBPP01064680
[OBPP] marine metagenome; ENVO:00002042
217
307
+
Ser
GGA
[ENA]
¢þ
>WENV181520931
OGHD01040696
[OGHD] metagenome; Human gut stool
315
405
+
Ser
GGA
[ENA]
¢þ
>WENV181593456
OGKS01029051
[OGKS] metagenome; Human gut stool
243
333
+
Ser
GGA
[ENA]
¢þ
>W141237796
BBJR01000057
Betaproteobacteria
Comamonas aquatica NBRC 14918 [BBJR]
831
741
-
Ser
GGA
[ENA]
¡û
>W141319073
JBOK01000028
Betaproteobacteria
Comamonas aquatica DA1877 [JBOK]
1325
1235
-
Ser
GGA
[ENA]
¡û
>WENV170598983
FUWD010057285
[FUWD] metagenome; unknown
388
298
-
Ser
GGA
[ENA]
¢þ
>WENV170609424
FUWD011394834
[FUWD] metagenome; unknown
122
32
-
Ser
GGA
[ENA]
¢þ
>C181187688
CP030086
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-Creno-4B4 [CP030086]
1073508
1073418
-
Ser
GGA
-
¡û
>C181219015
LT606951
Betaproteobacteria
Polynucleobacter necessarius [LT606951]
817748
817838
+
Ser
GGA
-
¡û
>C181219106
LT615228
Betaproteobacteria
Polynucleobacter necessarius [LT615228]
781390
781300
-
Ser
GGA
-
¡û
>W1910888654
NERZ01000002
Betaproteobacteria
Limnohabitans sp. MMS-10A-160 [NERZ]
257384
257294
-
Ser
GGA
[ENA]
¡û
>W1910888762
NESC01000001
Betaproteobacteria
Limnohabitans sp. Jir72 [NESC]
234392
234482
+
Ser
GGA
[ENA]
¡û
>W1810699170
QMCG01000003
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-UK1W16 [QMCG]
28632
28542
-
Ser
GGA
[ENA]
¡û
>W1810699187
QMCH01000002
Betaproteobacteria
Polynucleobacter paneuropaeus FUKU-NW-11 [QMCH]
242497
242587
+
Ser
GGA
[ENA]
¡û
>W1511516990
JXWN01000095
Betaproteobacteria
Comamonas aquatica CJG [JXWN]
211626
211716
+
Ser
GGA
[ENA]
¡û
>W11150941
AEWG01000160
Betaproteobacteria
Rubrivivax benzoatilyticus JA2 [AEWG]
63139
63229
+
Ser
GGA
[ENA]
¡û
>C121001101
AP012320
Betaproteobacteria
Rubrivivax gelatinosus IL144 [AP012320]
3005290
3005380
+
Ser
GGA
[Ensembl]
¡û
>C161002840
CP016603
Betaproteobacteria
Comamonas aquatica CJG [CP016603]
2629942
2630032
+
Ser
GGA
-
¡û
>C161092391
CP015922
Betaproteobacteria
Polynucleobacter wuianus QLW-P1FAT50C-4 [CP015922]
1238551
1238461
-
Ser
GGA
[Ensembl]
¡û
>WENV057269
AACY023289898
Marine microbial communities from Global Ocean Sampling (GOS)
572
480
-
Ser
GGA
[ENA]
>WENV058102
AACY023317666
Marine microbial communities from Global Ocean Sampling (GOS)
349
441
+
Ser
GGA
[ENA]
>W1610062778
BCNT01000009
Betaproteobacteria
Comamonas terrae [BCNT]
126091
126001
-
Ser
GGA
[ENA]
¡û
>W121060102
AJFF01000126
Betaproteobacteria
Rubrivivax gelatinosus CBS [AJFF]
3236
3146
-
Ser
GGA
[ENA]
¡û
>W1610609962
LFYP01000048
Betaproteobacteria
Comamonas kerstersii [LFYP]
28278
28368
+
Ser
GGA
[ENA]
¡û
>W1610610017
LFYP01000135
Betaproteobacteria
Comamonas kerstersii [LFYP]
114501
114411
-
Ser
GGA
[ENA]
¡û
>W1610792004
LOJI01000035
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
247322
247232
-
Ser
GGA
[ENA]
¡û
>W1610792026
LOJJ01000003
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
34495
34585
+
Ser
GGA
[ENA]
¡û
>W1610845626
LPXH01000035
Betaproteobacteria
Comamonas kerstersii 12322-1 [LPXH]
57110
57200
+
Ser
GGA
[ENA]
¡û
>W1610845627
LPXH01000035
Betaproteobacteria
Comamonas kerstersii 12322-1 [LPXH]
72924
73014
+
Ser
GGA
[ENA]
¡û
>W1611052753
MAIK01000383
Betaproteobacteria
Polynucleobacter necessarius [MAIK]
961
871
-
Ser
GGA
[ENA]
¡û
>WENV084370
BAAZ01020332
Gut microbiome of Human (healthy human sample F2-X, Child, Male)
656
748
+
Ser
GGA
[ENA]
>W1710060254
BCNT01000009
Betaproteobacteria
Comamonas terrae [BCNT]
126091
126001
-
Ser
GGA
[ENA]
¡û
>W1710731307
LFYP01000048
Betaproteobacteria
Comamonas kerstersii [LFYP]
28278
28368
+
Ser
GGA
[ENA]
¡û
>W1710731362
LFYP01000135
Betaproteobacteria
Comamonas kerstersii [LFYP]
114501
114411
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK