This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.168586 (31 seq.)
>W1710866452
LMHM01000007
Gammaproteobacteria
Lysobacter sp. Root690 [LMHM]
3550
3474
-
Ile
GAT
[ENA]
¡û
>W131215600
ATVD01000003
Gammaproteobacteria
Arenimonas oryziterrae DSM 21050 [ATVD]
564679
564755
+
Ile
GAT
[ENA]
¡û
>W131215612
ATVD01000007
Gammaproteobacteria
Arenimonas oryziterrae DSM 21050 [ATVD]
1501
1577
+
Ile
GAT
[ENA]
¡û
>WENV180695724
OCZS013880685
[OCZS] soil metagenome; soil
77
1
-
Ile
GAT
[ENA]
¢þ
>W141094207
AVCH01000078
Gammaproteobacteria
Arenimonas malthae CC-JY-1 [AVCH]
933
1009
+
Ile
GAT
[ENA]
¡û
>W141094262
AVCI01000017
Gammaproteobacteria
Arenimonas oryziterrae DSM 21050 = YC6267 [AVCI]
3613
3537
-
Ile
GAT
[ENA]
¡û
>W141094352
AVCK01000046
Gammaproteobacteria
Arenimonas metalli CF5-1 [AVCK]
79
155
+
Ile
GAT
[ENA]
¡û
>W141148261
AWXU01000060
Gammaproteobacteria
Arenimonas composti TR7-09 = DSM 18010 [AWXU]
3386
3310
-
Ile
GAT
[ENA]
¡û
>WENV182554016
OJCS01005125
[OJCS] seawater metagenome; Sea water
744
668
-
Ile
GAT
[ENA]
¢þ
>WENV182568564
OJEV01004078
[OJEV] seawater metagenome; Sea water
705
629
-
Ile
GAT
[ENA]
¢þ
>WENV182589679
OJIF01003197
[OJIF] seawater metagenome; Sea water
194
270
+
Ile
GAT
[ENA]
¢þ
>W141282855
JAJA01000029
Gammaproteobacteria
Lysobacter capsici AZ78 [JAJA]
87419
87343
-
Ile
GAT
[ENA]
¡û
>WENV183055464
OLHC01003277
[OLHC] seawater metagenome; Sea water
350
274
-
Ile
GAT
[ENA]
¢þ
>WENV183749639
PPFU01194497
[PPFU] hypolithon metagenome; Antarctic Hypolithon
307
231
-
Ile
GAT
[ENA]
¢þ
>WENV170018854
BBPD01001539
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
2031
2107
+
Ile
GAT
[ENA]
¢þ
>WENV170019710
BBPE01000173
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
3381
3305
-
Ile
GAT
[ENA]
¢þ
>WENV170705412
LNAO01000205
[LNAO] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
8415
8339
-
Ile
GAT
[ENA]
¢þ
>WENV170708229
LNAP01060931
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
837
761
-
Ile
GAT
[ENA]
¢þ
>WENV170996332
MWWF01220023
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
365
289
-
Ile
GAT
[ENA]
¢þ
>C181081784
CP023465
Gammaproteobacteria
Lysobacter capsici KNU-14 [CP023465]
461723
461799
+
Ile
GAT
-
¡û
>C181081786
CP023465
Gammaproteobacteria
Lysobacter capsici KNU-14 [CP023465]
1067872
1067948
+
Ile
GAT
-
¡û
>C191145528
CP035704
Gammaproteobacteria
Pseudolysobacter antarcticus AQ6-296 [CP035704]
339594
339670
+
Ile
GAT
-
¡û
>C191145530
CP035704
Gammaproteobacteria
Pseudolysobacter antarcticus AQ6-296 [CP035704]
465728
465804
+
Ile
GAT
-
¡û
>W1810354869
PVLF01000041
Gammaproteobacteria
Arenimonas caeni z29 [PVLF]
3605
3529
-
Ile
GAT
[ENA]
¡û
>W1511595040
LBMI01000013
Gammaproteobacteria
Lysobacter capsici X2-3 [LBMI]
2322
2398
+
Ile
GAT
[ENA]
¡û
>C121005581
CP003093
Gammaproteobacteria
Pseudoxanthomonas spadix BD-a59 [CP003093]
3414271
3414195
-
Ile
GAT
[Ensembl]
¡û
>C161031582
CP011130
Gammaproteobacteria
Lysobacter capsici 55 [CP011130]
499937
500013
+
Ile
GAT
[Ensembl]
¡û
>C161031584
CP011130
Gammaproteobacteria
Lysobacter capsici 55 [CP011130]
1100335
1100411
+
Ile
GAT
[Ensembl]
¡û
>W1610728798
LMHM01000007
Gammaproteobacteria
Lysobacter sp. Root690 [LMHM]
3550
3474
-
Ile
GAT
[ENA]
¡û
>ENV000316
AF268429
Environmental sample from ENV division of INSDC
201
277
+
Ile
GAT
[ENA]
>W1710544595
FOAX01000008
Gammaproteobacteria
Pseudoxanthomonas sp. GM95 [FOAX]
2236
2312
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK