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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.168732 (112 seq.)
>W1711047419
LROZ01000009
Bacteroidota
Myroides odoratus [LROZ]
40748
40823
+
Pro
TGG
[ENA]
¡û
>W1711047422
LROZ01000012
Bacteroidota
Myroides odoratus [LROZ]
93079
93004
-
Pro
TGG
[ENA]
¡û
>W1711047430
LROZ01000016
Bacteroidota
Myroides odoratus [LROZ]
33101
33178
+
Pro
TGG
[ENA]
¡û
>W1711487691
MKGI01000005
Bacteroidota
Cloacibacterium normanense [MKGI]
188183
188260
+
Pro
TGG
[ENA]
¡û
>W131224655
AUCZ01000002
Bacteroidota
Flavobacterium suncheonense DSM 17707 [AUCZ]
29757
29834
+
Pro
TGG
[ENA]
¡û
>W131224678
AUCZ01000006
Bacteroidota
Flavobacterium suncheonense DSM 17707 [AUCZ]
177734
177657
-
Pro
TGG
[ENA]
¡û
>WENV180035796
FTLB01010547
[FTLB] metagenome; soil
7875
7800
-
Pro
TGG
[ENA]
¢þ
>WENV180259371
OBEQ011096541
[OBEQ] groundwater metagenome; groundwater
7825
7900
+
Pro
TGG
[ENA]
¢þ
>WENV180722594
ODGM01003486
[ODGM] human metagenome; G_DNA_Palatine Tonsils
2365
2290
-
Pro
TGG
[ENA]
¢þ
>WENV180731756
ODGW01010864
[ODGW] human metagenome; G_DNA_Supragingival plaque
81
6
-
Pro
TGG
[ENA]
¢þ
>WENV180751241
ODHS01033655
[ODHS] human metagenome; G_DNA_Supragingival plaque
604
529
-
Pro
TGG
[ENA]
¢þ
>WENV180775445
ODIK01000460
[ODIK] human metagenome; G_DNA_Tongue dorsum
14090
14015
-
Pro
TGG
[ENA]
¢þ
>WENV180804396
ODJG01002477
[ODJG] human metagenome; G_DNA_Supragingival plaque
5181
5106
-
Pro
TGG
[ENA]
¢þ
>WENV180805913
ODJH01000512
[ODJH] human metagenome; G_DNA_Tongue dorsum
3878
3953
+
Pro
TGG
[ENA]
¢þ
>WENV180813304
ODJO01000327
[ODJO] human metagenome; G_DNA_Supragingival plaque
6022
5947
-
Pro
TGG
[ENA]
¢þ
>WENV180824205
ODJX01001473
[ODJX] human metagenome; G_DNA_Supragingival plaque
4349
4274
-
Pro
TGG
[ENA]
¢þ
>WENV180833743
ODKD01000165
[ODKD] human metagenome; G_DNA_Supragingival plaque
493
418
-
Pro
TGG
[ENA]
¢þ
>WENV180834320
ODKD01011550
[ODKD] human metagenome; G_DNA_Supragingival plaque
1257
1332
+
Pro
TGG
[ENA]
¢þ
>WENV180847717
ODKT01143270
[ODKT] human metagenome; G_DNA_Supragingival plaque
79
4
-
Pro
TGG
[ENA]
¢þ
>WENV180860112
ODLD01019614
[ODLD] human metagenome; G_DNA_Supragingival plaque
1297
1222
-
Pro
TGG
[ENA]
¢þ
>WENV180873262
ODLP01002574
[ODLP] human metagenome; G_DNA_Tongue dorsum
841
766
-
Pro
TGG
[ENA]
¢þ
>WENV180882123
ODMB01016457
[ODMB] human metagenome; G_DNA_Buccal mucosa
83
8
-
Pro
TGG
[ENA]
¢þ
>WENV180891644
ODMQ01003560
[ODMQ] human metagenome; G_DNA_Supragingival plaque
1910
1985
+
Pro
TGG
[ENA]
¢þ
>WENV180901005
ODOJ01023446
[ODOJ] human metagenome; G_DNA_Tongue dorsum
407
332
-
Pro
TGG
[ENA]
¢þ
>WENV180933104
ODTQ01011684
[ODTQ] human metagenome; G_DNA_Buccal mucosa
484
409
-
Pro
TGG
[ENA]
¢þ
>WENV180943892
ODUC01003685
[ODUC] human metagenome; G_DNA_Supragingival plaque
3656
3731
+
Pro
TGG
[ENA]
¢þ
>W141093422
AVBI01000012
Bacteroidota
Flavobacterium cauense R2A-7 [AVBI]
197962
198039
+
Pro
TGG
[ENA]
¡û
>W141093452
AVBI01000019
Bacteroidota
Flavobacterium cauense R2A-7 [AVBI]
80570
80647
+
Pro
TGG
[ENA]
¡û
>WENV180958439
ODUL01004848
[ODUL] human metagenome; G_DNA_Supragingival plaque
2357
2432
+
Pro
TGG
[ENA]
¢þ
>WENV180974639
ODUX01031478
[ODUX] human metagenome; G_DNA_Buccal mucosa
168
244
+
Pro
TGG
[ENA]
¢þ
>WENV181003803
ODVX01036174
[ODVX] human metagenome; G_DNA_Supragingival plaque
721
796
+
Pro
TGG
[ENA]
¢þ
>WENV181007615
ODWE01000298
[ODWE] human metagenome; G_DNA_Supragingival plaque
257
182
-
Pro
TGG
[ENA]
¢þ
>WENV181019544
ODWU01005511
[ODWU] human metagenome; G_DNA_Supragingival plaque
1105
1180
+
Pro
TGG
[ENA]
¢þ
>WENV181051260
ODYD01299396
[ODYD] human metagenome; G_DNA_Supragingival plaque
57
132
+
Pro
TGG
[ENA]
¢þ
>WENV181059740
ODYM01008641
[ODYM] human metagenome; G_DNA_Tongue dorsum
1681
1606
-
Pro
TGG
[ENA]
¢þ
>WENV181083405
OEAV01006597
[OEAV] human metagenome; G_DNA_Supragingival plaque
2186
2261
+
Pro
TGG
[ENA]
¢þ
>WENV181087252
OEAY01021671
[OEAY] human metagenome; G_DNA_Tongue dorsum
204
129
-
Pro
TGG
[ENA]
¢þ
>WENV181097663
OECA01019366
[OECA] human metagenome; G_DNA_Tongue dorsum
1295
1370
+
Pro
TGG
[ENA]
¢þ
>WENV181124188
OEFQ01022063
[OEFQ] human metagenome; G_DNA_Supragingival plaque
235
310
+
Pro
TGG
[ENA]
¢þ
>WENV181143049
OEHM01000071
[OEHM] human metagenome; G_DNA_Supragingival plaque
30616
30691
+
Pro
TGG
[ENA]
¢þ
>WENV181152118
OEIA01000134
[OEIA] human metagenome; G_DNA_Supragingival plaque
10681
10606
-
Pro
TGG
[ENA]
¢þ
>WENV181182089
OEJV01002160
[OEJV] human metagenome; G_DNA_Supragingival plaque
7474
7399
-
Pro
TGG
[ENA]
¢þ
>WENV181837187
OGVK01007065
[OGVK] freshwater metagenome; freshwater
1544
1469
-
Pro
TGG
[ENA]
¢þ
>WENV183729771
PJTR01000068
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
120505
120430
-
Pro
TGG
[ENA]
¢þ
>WENV170003712
AGTN01423589
[AGTN] bioreactor metagenome; poplar biomass
90
167
+
Pro
TGG
[ENA]
¢þ
>WENV170654650
JRYL01003141
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
4546
4621
+
Pro
TGG
[ENA]
¢þ
>WENV170657092
JTFO01082685
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
311
386
+
Pro
TGG
[ENA]
¢þ
>WENV170720378
LSQX01151263
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
68774
68699
-
Pro
TGG
[ENA]
¢þ
>C181178747
CP029463
Bacteroidota
Flavobacterium sediminis MEBiC07310 [CP029463]
3084331
3084406
+
Pro
TGG
-
¡û
>C181178751
CP029463
Bacteroidota
Flavobacterium sediminis MEBiC07310 [CP029463]
2416632
2416557
-
Pro
TGG
-
¡û
>C181225809
LT906465
Bacteroidota
Chryseobacterium taklimakanense NCTC13490 [LT906465]
2592526
2592451
-
Pro
TGG
-
¡û
>C191008568
CP010992
Bacteroidota
Flavobacterium columnare B185 [CP010992]
1092904
1092979
+
Pro
TGG
-
¡û
>C191008570
CP010992
Bacteroidota
Flavobacterium columnare B185 [CP010992]
1349626
1349701
+
Pro
TGG
-
¡û
>C191008571
CP010992
Bacteroidota
Flavobacterium columnare B185 [CP010992]
1349728
1349803
+
Pro
TGG
-
¡û
>C191120899
CP034171
Bacteroidota
Chryseobacterium taklimakanense H4753 [CP034171]
1795507
1795582
+
Pro
TGG
-
¡û
>C191134768
CP035107
Bacteroidota
Ornithobacterium rhinotracheale FARPER-174b [CP035107]
1390816
1390891
+
Pro
TGG
-
¡û
>C191134770
CP035107
Bacteroidota
Ornithobacterium rhinotracheale FARPER-174b [CP035107]
1391040
1391115
+
Pro
TGG
-
¡û
>W1910577997
JUIX01000006
Bacteroidota
Flavobacterium dauae TCH3-2 [JUIX]
84295
84220
-
Pro
TGG
[ENA]
¡û
>W1910577998
JUIX01000006
Bacteroidota
Flavobacterium dauae TCH3-2 [JUIX]
84188
84113
-
Pro
TGG
[ENA]
¡û
>W1910578022
JUIX01000029
Bacteroidota
Flavobacterium dauae TCH3-2 [JUIX]
13469
13394
-
Pro
TGG
[ENA]
¡û
>W1910804170
MTCX01000055
Bacteroidota
Flavobacterium columnare 1201 [MTCX]
17862
17937
+
Pro
TGG
[ENA]
¡û
>W1910804186
MTCX01000126
Bacteroidota
Flavobacterium columnare 1201 [MTCX]
307
232
-
Pro
TGG
[ENA]
¡û
>W1910927696
NIPO01000001
Bacteroidota
Avrilella dinanensis UR159 [NIPO]
1108882
1108957
+
Pro
TGG
[ENA]
¡û
>W1910927697
NIPO01000001
Bacteroidota
Avrilella dinanensis UR159 [NIPO]
1154972
1155047
+
Pro
TGG
[ENA]
¡û
>W1911564323
PCMX01000053
Bacteroidota
Flavobacterium columnare NBRC 100251 = ATCC 23463 [PCMX]
40525
40450
-
Pro
TGG
[ENA]
¡û
>W1911564324
PCMX01000053
Bacteroidota
Flavobacterium columnare NBRC 100251 = ATCC 23463 [PCMX]
40423
40348
-
Pro
TGG
[ENA]
¡û
>W1911564336
PCMX01000079
Bacteroidota
Flavobacterium columnare NBRC 100251 = ATCC 23463 [PCMX]
38192
38117
-
Pro
TGG
[ENA]
¡û
>W1911564339
PCMX01000079
Bacteroidota
Flavobacterium columnare NBRC 100251 = ATCC 23463 [PCMX]
37866
37791
-
Pro
TGG
[ENA]
¡û
>W1810355169
PVLU01000003
Bacteroidota
Flavobacterium columnare MS-FC-4 [PVLU]
2070677
2070602
-
Pro
TGG
[ENA]
¡û
>W1810355172
PVLU01000003
Bacteroidota
Flavobacterium columnare MS-FC-4 [PVLU]
2070351
2070276
-
Pro
TGG
[ENA]
¡û
>W1810355174
PVLU01000003
Bacteroidota
Flavobacterium columnare MS-FC-4 [PVLU]
1813828
1813753
-
Pro
TGG
[ENA]
¡û
>W1810355175
PVLU01000003
Bacteroidota
Flavobacterium columnare MS-FC-4 [PVLU]
1813726
1813651
-
Pro
TGG
[ENA]
¡û
>W1810758165
QPIE01000006
Bacteroidota
Chryseobacterium lacus YLOS41 [QPIE]
89979
90054
+
Pro
TGG
[ENA]
¡û
>C151013068
CP006828
Bacteroidota
Ornithobacterium rhinotracheale ORT-UMN 88 [CP006828]
325325
325248
-
Pro
TGG
[Ensembl]
¡û
>C151013070
CP006828
Bacteroidota
Ornithobacterium rhinotracheale ORT-UMN 88 [CP006828]
325098
325021
-
Pro
TGG
[Ensembl]
¡û
>ENV09003052
ADGO01002594
Compost metagenome contig00001
243
166
-
Pro
TGG
[ENA]
¡û
>C11123809
CP002455
Bacteroidota
Weeksella virosa DSM 16922 [CP002455]
1880576
1880651
+
Pro
TGG
[Ensembl]
¡û
>C11123817
CP002455
Bacteroidota
Weeksella virosa DSM 16922 [CP002455]
1088508
1088431
-
Pro
TGG
[Ensembl]
¡û
>C121010297
CP003283
Bacteroidota
Ornithobacterium rhinotracheale DSM 15997 [CP003283]
319081
319004
-
Pro
TGG
[Ensembl]
¡û
>C121010299
CP003283
Bacteroidota
Ornithobacterium rhinotracheale DSM 15997 [CP003283]
318854
318777
-
Pro
TGG
[Ensembl]
¡û
>C161063748
CP013992
Bacteroidota
Flavobacterium covae 94-081 [CP013992]
879215
879138
-
Pro
TGG
[Ensembl]
¡û
>C161063751
CP013992
Bacteroidota
Flavobacterium covae 94-081 [CP013992]
878888
878811
-
Pro
TGG
[Ensembl]
¡û
>C161063756
CP013992
Bacteroidota
Flavobacterium covae 94-081 [CP013992]
626320
626243
-
Pro
TGG
[Ensembl]
¡û
>C161063757
CP013992
Bacteroidota
Flavobacterium covae 94-081 [CP013992]
626211
626134
-
Pro
TGG
[Ensembl]
¡û
>C161083207
CP015107
Bacteroidota
Flavobacterium covae C#2 [CP015107]
3010616
3010693
+
Pro
TGG
-
¡û
>C161083210
CP015107
Bacteroidota
Flavobacterium covae C#2 [CP015107]
3010943
3011020
+
Pro
TGG
-
¡û
>C161083215
CP015107
Bacteroidota
Flavobacterium covae C#2 [CP015107]
3264456
3264533
+
Pro
TGG
-
¡û
>C161083216
CP015107
Bacteroidota
Flavobacterium covae C#2 [CP015107]
3264565
3264642
+
Pro
TGG
-
¡û
>W1610029719
AXDE01000002
Bacteroidota
Ornithobacterium rhinotracheale H06-030791 [AXDE]
260404
260327
-
Pro
TGG
[ENA]
¡û
>W1610029721
AXDE01000002
Bacteroidota
Ornithobacterium rhinotracheale H06-030791 [AXDE]
260177
260100
-
Pro
TGG
[ENA]
¡û
>W1610535043
JRLW01000003
Bacteroidota
Flavobacterium suncheonense GH29-5 = DSM 17707 [JRLW]
197967
198044
+
Pro
TGG
[ENA]
¡û
>W1610535048
JRLW01000004
Bacteroidota
Flavobacterium suncheonense GH29-5 = DSM 17707 [JRLW]
102246
102323
+
Pro
TGG
[ENA]
¡û
>W1610535089
JRLX01000009
Bacteroidota
Flavobacterium rivuli WB 3.3-2 = DSM 21788 [JRLX]
21630
21553
-
Pro
TGG
[ENA]
¡û
>W1610535160
JRLZ01000001
Bacteroidota
Flavobacterium enshiense DK69 [JRLZ]
305676
305599
-
Pro
TGG
[ENA]
¡û
>W1610535167
JRLZ01000003
Bacteroidota
Flavobacterium enshiense DK69 [JRLZ]
188083
188006
-
Pro
TGG
[ENA]
¡û
>W1610888548
LROZ01000009
Bacteroidota
Myroides odoratus [LROZ]
40748
40823
+
Pro
TGG
[ENA]
¡û
>W1610888551
LROZ01000012
Bacteroidota
Myroides odoratus [LROZ]
93079
93004
-
Pro
TGG
[ENA]
¡û
>W1610888559
LROZ01000016
Bacteroidota
Myroides odoratus [LROZ]
33101
33178
+
Pro
TGG
[ENA]
¡û
>W1710027089
AXDE01000002
Bacteroidota
Ornithobacterium rhinotracheale H06-030791 [AXDE]
260404
260327
-
Pro
TGG
[ENA]
¡û
>W1710027091
AXDE01000002
Bacteroidota
Ornithobacterium rhinotracheale H06-030791 [AXDE]
260177
260100
-
Pro
TGG
[ENA]
¡û
>W1710507348
FMVF01000002
Bacteroidota
Flavobacterium caeni [FMVF]
96
19
-
Pro
TGG
[ENA]
¡û
>W1710507378
FMVF01000015
Bacteroidota
Flavobacterium caeni [FMVF]
96
19
-
Pro
TGG
[ENA]
¡û
>W1710540845
FNXE01000018
Bacteroidota
Paenimyroides aquimaris marinum [FNXE]
2628
2551
-
Pro
TGG
[ENA]
¡û
>W1710540849
FNXE01000022
Bacteroidota
Paenimyroides aquimaris marinum [FNXE]
31106
31183
+
Pro
TGG
[ENA]
¡û
>W1710540857
FNXE01000022
Bacteroidota
Paenimyroides aquimaris marinum [FNXE]
41056
41133
+
Pro
TGG
[ENA]
¡û
>W1710588419
FQZI01000002
Bacteroidota
Flavobacterium terrae [FQZI]
300274
300197
-
Pro
TGG
[ENA]
¡û
>W1710588430
FQZI01000003
Bacteroidota
Flavobacterium terrae [FQZI]
184648
184571
-
Pro
TGG
[ENA]
¡û
>W1710637279
JRLW01000003
Bacteroidota
Flavobacterium suncheonense GH29-5 = DSM 17707 [JRLW]
197967
198044
+
Pro
TGG
[ENA]
¡û
>W1710637284
JRLW01000004
Bacteroidota
Flavobacterium suncheonense GH29-5 = DSM 17707 [JRLW]
102246
102323
+
Pro
TGG
[ENA]
¡û
>W1710637325
JRLX01000009
Bacteroidota
Flavobacterium rivuli WB 3.3-2 = DSM 21788 [JRLX]
21630
21553
-
Pro
TGG
[ENA]
¡û
>W1710637396
JRLZ01000001
Bacteroidota
Flavobacterium enshiense DK69 [JRLZ]
305676
305599
-
Pro
TGG
[ENA]
¡û
>W1710637403
JRLZ01000003
Bacteroidota
Flavobacterium enshiense DK69 [JRLZ]
188083
188006
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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