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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.169039 (12 seq.)
>WENV180675236
OCVV011357400
[OCVV] gut metagenome; gut
17205
17129
-
Arg
CCG
[ENA]
¡û
>WENV180675240
OCVV011357400
[OCVV] gut metagenome; gut
17205
17129
-
Arg
CCG
[ENA]
¡û
>WENV180678667
OCVV012054226
[OCVV] gut metagenome; gut
203
276
+
Arg
CCG
[ENA]
¡û
>WENV180678668
OCVV012054226
[OCVV] gut metagenome; gut
203
276
+
Arg
CCG
[ENA]
¡û
>WENV182749492
OJQY01000065
[OJQY] human gut metagenome; stool sample
27770
27694
-
Arg
CCG
[ENA]
¡û
>WENV183139338
OLOI01000318
[OLOI] human gut metagenome; faeces
28434
28358
-
Arg
CCG
[ENA]
¡û
>WENV183140133
OLOI01007975
[OLOI] human gut metagenome; faeces
409
485
+
Arg
CCG
[ENA]
¡û
>W2110439479
JAEQMG010000046
Bacillota
M6(2020) [JAEQMG]
16
92
+
Arg
CCG
[ENA]
¡û
>W2110439516
JAEQMG010000179
Bacillota
M6(2020) [JAEQMG]
1691
1615
-
Arg
CCG
[ENA]
¡û
>W2110439518
JAEQMG010000188
Bacillota
M6(2020) [JAEQMG]
1076
1152
+
Arg
CCG
[ENA]
¡û
>W2110622241
JAHLQB010000043
Bacillota
Lachnoclostridium sp. MSJ-17 [JAHLQB]
11887
11811
-
Arg
CCG
[ENA]
¡û
>W1710505818
FMUA01000009
Bacillota
Ruminococcaceae bacterium P7 [FMUA]
135704
135780
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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