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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.169549 (11 seq.)
>WENV180125945
OASZ01000257
[OASZ] human gut metagenome; faeces
39708
39783
+
Asp
GTC
[ENA]
¢þ
>WENV180523402
OCHG01024325
[OCHG] human gut metagenome; human gut
569
494
-
Asp
GTC
[ENA]
¢þ
>WENV180610463
OCPW01000258
[OCPW] human gut metagenome; human gut
1757
1682
-
Asp
GTC
[ENA]
¢þ
>WENV180645171
OCSG01018777
[OCSG] human gut metagenome; human gut
729
654
-
Asp
GTC
[ENA]
¢þ
>WENV181694523
OGPB01011929
[OGPB] human gut metagenome; faeces
1137
1062
-
Asp
GTC
[ENA]
¢þ
>WENV181699429
OGPF01056398
[OGPF] human gut metagenome; faeces
145
221
+
Asp
GTC
[ENA]
¢þ
>WENV182039851
OHDG01006263
[OHDG] human gut metagenome; feces
809
884
+
Asp
GTC
[ENA]
¢þ
>WENV182270020
OHUD01053431
[OHUD] human gut metagenome; feces
365
440
+
Asp
GTC
[ENA]
¢þ
>WENV182376600
OIDD01056655
[OIDD] human gut metagenome; feces
305
230
-
Asp
GTC
[ENA]
¢þ
>WENV183148703
OLOO01000255
[OLOO] human gut metagenome; faeces
39683
39758
+
Asp
GTC
[ENA]
¢þ
>WENV183197955
OLPV01000278
[OLPV] human gut metagenome; faeces
5270
5195
-
Asp
GTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK