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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.170069 (20 seq.)
>W131145884
AQGK01000001
Bacteroidota
Pedobacter heparinus DSM 2366 [AQGK]
3302
3377
+
Ile
GAT
[ENA]
¡û
>W131145893
AQGK01000001
Bacteroidota
Pedobacter heparinus DSM 2366 [AQGK]
2927090
2927015
-
Ile
GAT
[ENA]
¡û
>W131145912
AQGK01000002
Bacteroidota
Pedobacter heparinus DSM 2366 [AQGK]
8148
8223
+
Ile
GAT
[ENA]
¡û
>W131145923
AQGK01000003
Bacteroidota
Pedobacter heparinus DSM 2366 [AQGK]
2233401
2233476
+
Ile
GAT
[ENA]
¡û
>W131145931
AQGK01000003
Bacteroidota
Pedobacter heparinus DSM 2366 [AQGK]
1687
1612
-
Ile
GAT
[ENA]
¡û
>WENV170996963
MWWG01010999
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
481
404
-
Ile
GAT
[ENA]
¢þ
>WENV170998141
MWWI01022740
[MWWI] soil metagenome; FI-1 sample; Antarctic (ecotone) soil
205
282
+
Ile
GAT
[ENA]
¢þ
>C181001378
AP017313
Bacteroidota
Mucilaginibacter gotjawali SA3-7 [AP017313]
428118
428193
+
Ile
GAT
-
¡û
>C181001404
AP017313
Bacteroidota
Mucilaginibacter gotjawali SA3-7 [AP017313]
4721177
4721102
-
Ile
GAT
-
¡û
>C09108543
CP001681
Bacteroidota
Pedobacter heparinus DSM 2366 [CP001681]
1370191
1370266
+
Ile
GAT
[Ensembl]
¡û
>C09108557
CP001681
Bacteroidota
Pedobacter heparinus DSM 2366 [CP001681]
4305860
4305785
-
Ile
GAT
[Ensembl]
¡û
>C09108559
CP001681
Bacteroidota
Pedobacter heparinus DSM 2366 [CP001681]
4298539
4298464
-
Ile
GAT
[Ensembl]
¡û
>W1810265839
PQVF01000026
Bacteroidota
Solitalea longa HR-AV [PQVF]
1755
1830
+
Ile
GAT
[ENA]
¡û
>W1810474646
QAIL01000243
Bacteroidota
Pedobacter sp. HMWF019 [QAIL]
1929
2004
+
Ile
GAT
[ENA]
¡û
>C121011477
CP003349
Bacteroidota
Solitalea canadensis DSM 3403 [CP003349]
9360
9437
+
Ile
GAT
[Ensembl]
¡û
>C121011479
CP003349
Bacteroidota
Solitalea canadensis DSM 3403 [CP003349]
40276
40353
+
Ile
GAT
[Ensembl]
¡û
>C121011488
CP003349
Bacteroidota
Solitalea canadensis DSM 3403 [CP003349]
738248
738325
+
Ile
GAT
[Ensembl]
¡û
>C121011495
CP003349
Bacteroidota
Solitalea canadensis DSM 3403 [CP003349]
1465781
1465858
+
Ile
GAT
[Ensembl]
¡û
>W121017865
AGSC01000046
Bacteroidota
Solitalea canadensis DSM 3403 [AGSC]
29231
29154
-
Ile
GAT
[ENA]
¡û
>W1710602996
FUYR01000009
Bacteroidota
Daejeonella lutea luteus [FUYR]
3701
3626
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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