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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.170288 (5 seq.)
>WENV180357491
OBNN01017949
[OBNN] marine metagenome; Coastal water
487
411
-
His
GTG
[ENA]
¢þ
>WENV180365396
OBOB01119053
[OBOB] marine metagenome; ENVO:00002019, 'BRACKISH WATER
319
243
-
His
GTG
[ENA]
¢þ
>WENV180367992
OBOF01015219
[OBOF] marine metagenome; ENVO:00002010
694
770
+
His
GTG
[ENA]
¢þ
>WENV180368937
OBOG01007806
[OBOG] marine metagenome; seawater
551
475
-
His
GTG
[ENA]
¢þ
>WENV180591568
OCOV01048519
[OCOV] marine metagenome; ENVO:01000301
338
262
-
His
GTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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