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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.170322 (21 seq.)
>W1710981672
LPPL01000053
Gammaproteobacteria
Enterobacter kobei [LPPL]
41636
41560
-
Arg
CCG
[ENA]
¡û
>W1710983284
LPQL01000005
Gammaproteobacteria
Enterobacter hormaechei subsp. steigerwaltii [LPQL]
59457
59533
+
Arg
CCG
[ENA]
¡û
>C171010905
CP011662
Gammaproteobacteria
Enterobacter hormaechei CAV1176 [CP011662]
4773783
4773707
-
Arg
CCG
-
¡û
>WENV182809039
OJWM01000080
[OJWM] human gut metagenome; human gut
454
530
+
Arg
CCG
[ENA]
¢þ
>WENV182817942
OJZN01000003
[OJZN] human gut metagenome; human gut
42448
42372
-
Arg
CCG
[ENA]
¢þ
>WENV182854016
OKMP01000130
[OKMP] human gut metagenome; human gut
9522
9598
+
Arg
CCG
[ENA]
¢þ
>WENV182855419
OKNA01000012
[OKNA] human gut metagenome; human gut
115909
115985
+
Arg
CCG
[ENA]
¢þ
>WENV182859339
OKOM01000054
[OKOM] human gut metagenome; human gut
17841
17917
+
Arg
CCG
[ENA]
¢þ
>W141352800
JCLR01000014
Gammaproteobacteria
Enterobacter sp. MGH 6 [JCLR]
212108
212032
-
Arg
CCG
[ENA]
¡û
>W141353180
JCLW01000010
Gammaproteobacteria
Enterobacter sp. MGH 1 [JCLW]
42373
42297
-
Arg
CCG
[ENA]
¡û
>W1911425182
NXHI01000032
Gammaproteobacteria
Enterobacter cloacae 194 [NXHI]
3348
3272
-
Arg
CCG
[ENA]
¡û
>W1911620140
PQKY01000009
Gammaproteobacteria
Enterobacter cloacae complex sp. ECNIH8 [PQKY]
97666
97590
-
Arg
CCG
[ENA]
¡û
>C151037956
CP008823
Gammaproteobacteria
Enterobacter cloacae ECNIH2 [CP008823]
466549
466625
+
Arg
CCG
[Ensembl]
¡û
>C151084642
CP011572
Gammaproteobacteria
Enterobacter hormaechei CAV1311 [CP011572]
2025843
2025767
-
Arg
CCG
[Ensembl]
¡û
>C151084915
CP011581
Gammaproteobacteria
Enterobacter hormaechei CAV1411 [CP011581]
139702
139626
-
Arg
CCG
[Ensembl]
¡û
>C151084966
CP011584
Gammaproteobacteria
Enterobacter hormaechei CAV1668 [CP011584]
4791656
4791732
+
Arg
CCG
[Ensembl]
¡û
>C151085815
CP011650
Gammaproteobacteria
Enterobacter hormaechei CAV1669 [CP011650]
4765013
4765089
+
Arg
CCG
[Ensembl]
¡û
>W1610453173
FKET01000031
Gammaproteobacteria
Enterobacter roggenkampii cloacae [FKET]
49374
49298
-
Arg
CCG
[ENA]
¡û
>W1610837663
LPPL01000053
Gammaproteobacteria
Enterobacter kobei [LPPL]
41636
41560
-
Arg
CCG
[ENA]
¡û
>W1610839275
LPQL01000005
Gammaproteobacteria
Enterobacter hormaechei subsp. steigerwaltii [LPQL]
59457
59533
+
Arg
CCG
[ENA]
¡û
>W1710452801
FKET01000031
Gammaproteobacteria
Enterobacter roggenkampii cloacae [FKET]
49374
49298
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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