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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.170340 (6 seq.)
>WENV181478339
OGFF01029457
[OGFF] metagenome; Human gut stool
1035
959
-
Met
CAT
[ENA]
¢þ
>WENV182417104
OIGD01008449
[OIGD] human gut metagenome; human gut
487
411
-
Met
CAT
[ENA]
¢þ
>WENV182885933
OKSC01048068
[OKSC] human gut metagenome; faeces
961
885
-
Met
CAT
[ENA]
¢þ
>WENV182972369
OKXI01032223
[OKXI] human gut metagenome; human gut
28
104
+
Met
CAT
[ENA]
¢þ
>WENV183046194
OLGE01089948
[OLGE] human gut metagenome; faeces
615
691
+
Met
CAT
[ENA]
¢þ
>WENV183634368
OOIG01019945
[OOIG] human gut metagenome; human gut
623
699
+
Met
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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