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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.170959 (56 seq.)
>W131171349
ARGD01000029
Campylobacterota
Campylobacter ureolyticus DSM 20703 [ARGD]
50303
50379
+
His
GTG
[ENA]
¡û
>WENV180242390
OBDI01209255
[OBDI] metagenome; diffuse fluid
76
152
+
His
GTG
[ENA]
¢þ
>W08010330
ABQT01000025
Campylobacterota
Helicobacter cinaedi CCUG 18818 [ABQT]
236735
236662
-
His
GTG
[ENA]
¡û
>WENV181804461
OGSF01000972
[OGSF] human gut metagenome; fecal sample 3 from infant 5
4618
4694
+
His
GTG
[ENA]
¢þ
>WENV181806408
OGSK01004126
[OGSK] human gut metagenome; fecal sample 2 from infant 5
229
305
+
His
GTG
[ENA]
¢þ
>WENV183515390
OMKS01060739
[OMKS] sediment metagenome; hot spring sediment
429
505
+
His
GTG
[ENA]
¢þ
>WENV170657678
JTFP01009159
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
168
92
-
His
GTG
[ENA]
¢þ
>WENV170685122
LFRM01073647
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
4726
4802
+
His
GTG
[ENA]
¢þ
>WENV170722598
LSQX01234984
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
10604
10680
+
His
GTG
[ENA]
¢þ
>W141463402
JFJK01000004
Campylobacterota
Campylobacter ureolyticus [JFJK]
40855
40779
-
His
GTG
[ENA]
¡û
>C191000204
AP017374
Campylobacterota
Helicobacter cinaedi MRY08-1234 [AP017374]
808736
808812
+
His
GTG
-
¡û
>C191002279
AP018446
Campylobacterota
Helicobacter cinaedi P03D0629 [AP018446]
835574
835650
+
His
GTG
-
¡û
>C191002334
AP018447
Campylobacterota
Helicobacter cinaedi P06D0798 [AP018447]
1154344
1154268
-
His
GTG
-
¡û
>C191003927
AP018676
Campylobacterota
Helicobacter cinaedi P01D0000 [AP018676]
1153125
1153049
-
His
GTG
-
¡û
>W141555903
JHQP01000002
Campylobacterota
Campylobacter hyointestinalis subsp. hyointestinalis [JHQP]
88242
88318
+
His
GTG
[ENA]
¡û
>W1910546114
FZMI01000005
Campylobacterota
Helicobacter cinaedi [FZMI]
49156
49080
-
His
GTG
[ENA]
¡û
>W1910546150
FZMJ01000004
Campylobacterota
Helicobacter cinaedi [FZMJ]
17168
17244
+
His
GTG
[ENA]
¡û
>W1910756271
MLAS01000006
Campylobacterota
Helicobacter sp. 13S00477-4 [MLAS]
65523
65447
-
His
GTG
[ENA]
¡û
>W1910928092
NIQH01000002
Campylobacterota
Campylobacter hyointestinalis subsp. hyointestinalis S1547c [NIQH]
83271
83347
+
His
GTG
[ENA]
¡û
>W1910928419
NIQP01000002
Campylobacterota
Campylobacter hyointestinalis subsp. hyointestinalis S1614a [NIQP]
197612
197536
-
His
GTG
[ENA]
¡û
>W1911770829
QXJF01000018
Campylobacterota
Helicobacter labetoulli 48519 [QXJF]
24424
24348
-
His
GTG
[ENA]
¡û
>W1810002672
BEYY01000200
Campylobacterota
Helicobacter cinaedi P04D0736 [BEYY]
2726
2802
+
His
GTG
[ENA]
¡û
>W1810002714
BEYZ01000172
Campylobacterota
Helicobacter cinaedi P05D0741 [BEYZ]
2723
2799
+
His
GTG
[ENA]
¡û
>W1810002741
BEZB01000170
Campylobacterota
Helicobacter cinaedi P07D0876 [BEZB]
40270
40194
-
His
GTG
[ENA]
¡û
>W1810002785
BEZC01000194
Campylobacterota
Helicobacter cinaedi P08D0905 [BEZC]
2726
2802
+
His
GTG
[ENA]
¡û
>W1810002818
BEZD01000182
Campylobacterota
Helicobacter cinaedi P09D0927 [BEZD]
2721
2797
+
His
GTG
[ENA]
¡û
>W1810002856
BEZE01000194
Campylobacterota
Helicobacter cinaedi P10D0937 [BEZE]
2724
2800
+
His
GTG
[ENA]
¡û
>W1810002893
BEZF01000160
Campylobacterota
Helicobacter cinaedi P11D0946 [BEZF]
2736
2812
+
His
GTG
[ENA]
¡û
>W1810002931
BEZG01000178
Campylobacterota
Helicobacter cinaedi P13D0979 [BEZG]
2704
2780
+
His
GTG
[ENA]
¡û
>W1810002999
BEZI01000158
Campylobacterota
Helicobacter cinaedi P17D1144 [BEZI]
2704
2780
+
His
GTG
[ENA]
¡û
>W1810003014
BEZJ01000035
Campylobacterota
Helicobacter cinaedi P18D1268 [BEZJ]
7420
7344
-
His
GTG
[ENA]
¡û
>W1810003058
BEZK01000043
Campylobacterota
Helicobacter cinaedi P19D1315 [BEZK]
2771
2847
+
His
GTG
[ENA]
¡û
>W1810003103
BEZL01000146
Campylobacterota
Helicobacter cinaedi P20D1835 [BEZL]
2686
2762
+
His
GTG
[ENA]
¡û
>W1810003152
BEZM01000215
Campylobacterota
Helicobacter cinaedi CCUG18818 [BEZM]
6482
6406
-
His
GTG
[ENA]
¡û
>W1810003204
BEZO01000071
Campylobacterota
Helicobacter cinaedi P02D0213 [BEZO]
2794
2870
+
His
GTG
[ENA]
¡û
>W1810003257
BEZP01000190
Campylobacterota
Helicobacter cinaedi P15D1072 [BEZP]
2718
2794
+
His
GTG
[ENA]
¡û
>W1810003289
BEZQ01000176
Campylobacterota
Helicobacter cinaedi P16D1106 [BEZQ]
2712
2788
+
His
GTG
[ENA]
¡û
>W1810003317
BEZR01000141
Campylobacterota
Helicobacter cinaedi P12D0946 [BEZR]
44455
44379
-
His
GTG
[ENA]
¡û
>W1810003370
BEZS01000241
Campylobacterota
Helicobacter cinaedi P11D1015 [BEZS]
38181
38105
-
His
GTG
[ENA]
¡û
>W1810010694
BGKD01000122
Campylobacterota
Helicobacter cinaedi CCUG19503 [BGKD]
2770
2846
+
His
GTG
[ENA]
¡û
>W1810010734
BGKE01000143
Campylobacterota
Helicobacter cinaedi CCUG19504 [BGKE]
2731
2807
+
His
GTG
[ENA]
¡û
>W1810010749
BGKF01000008
Campylobacterota
Helicobacter cinaedi PAGU617 [BGKF]
6074
5998
-
His
GTG
[ENA]
¡û
>W1810010795
BGKG01000094
Campylobacterota
Helicobacter cinaedi PAGU1382 [BGKG]
2794
2718
-
His
GTG
[ENA]
¡û
>W1810148279
PIRK01000013
Campylobacterota
Campylobacter concisus H30O-S1 [PIRK]
550
474
-
His
GTG
[ENA]
¡û
>W1810148364
PIRM01000005
Campylobacterota
Campylobacter concisus H28O-S2 [PIRM]
111771
111847
+
His
GTG
[ENA]
¡û
>W1810187698
PKHU01000003
Campylobacterota
Campylobacter ureolyticus UMB0112 [PKHU]
256216
256292
+
His
GTG
[ENA]
¡û
>W1511353341
JRPE01000108
Campylobacterota
Helicobacter magdeburgensis MIT 96-1001 [JRPE]
3369
3445
+
His
GTG
[ENA]
¡û
>C161089408
CP015575
Campylobacterota
Campylobacter hyointestinalis subsp. hyointestinalis LMG 9260 [CP015575]
1626565
1626489
-
His
GTG
[Ensembl]
¡û
>W1610164199
FAUU01000001
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAUU]
270003
270079
+
His
GTG
[ENA]
¡û
>W1610164412
FAUZ01000001
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAUZ]
291422
291346
-
His
GTG
[ENA]
¡û
>W1610164547
FAVD01000002
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAVD]
291445
291369
-
His
GTG
[ENA]
¡û
>C131000559
AP012492
Campylobacterota
Helicobacter cinaedi CCUG 18818 = ATCC BAA-847 [AP012492]
1157838
1157762
-
His
GTG
[Ensembl]
¡û
>W1710165866
FAUU01000001
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAUU]
270003
270079
+
His
GTG
[ENA]
¡û
>W1710166079
FAUZ01000001
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAUZ]
291422
291346
-
His
GTG
[ENA]
¡û
>W1710166214
FAVD01000002
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAVD]
291445
291369
-
His
GTG
[ENA]
¡û
>W1710577765
FPBB01000002
Campylobacterota
Campylobacter hyointestinalis [FPBB]
89082
89158
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK