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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.172063 (20 seq.)
>WENV180395653
OBPT01065120
[OBPT] marine metagenome; ENVO:00002010 seawater
290
213
-
Val
TAC
[ENA]
¢þ
>WENV180397848
OBPZ01015564
[OBPZ] marine metagenome; ENVO:00002010
35
112
+
Val
TAC
[ENA]
¢þ
>WENV181322405
OFKR01003181
[OFKR] marine metagenome; sea ice
959
884
-
Val
TAC
[ENA]
¢þ
>WENV181325647
OFLJ01010802
[OFLJ] seawater metagenome; seawater
246
323
+
Val
TAC
[ENA]
¢þ
>WENV182557865
OJDL01000234
[OJDL] seawater metagenome; Sea water
19859
19934
+
Val
TAC
[ENA]
¢þ
>WENV182572275
OJFL01002206
[OJFL] seawater metagenome; Sea water
4374
4299
-
Val
TAC
[ENA]
¢þ
>WENV182580041
OJGU01001872
[OJGU] seawater metagenome; Sea water
5707
5632
-
Val
TAC
[ENA]
¢þ
>WENV183625616
OOGG01003925
[OOGG] marine metagenome; sea ice
134
59
-
Val
TAC
[ENA]
¢þ
>WENV183720483
PDWJ01035370
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
8
84
+
Val
TAC
[ENA]
¢þ
>WENV183722388
PDWJ01124328
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
949
1026
+
Val
TAC
[ENA]
¢þ
>WENV170274362
CERM01012379
[CERM] marine metagenome genome assembly TARA_067_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2560
2637
+
Val
TAC
[ENA]
¢þ
>WENV170551073
CXWF01095879
[CXWF] marine metagenome genome assembly TARA_064_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1484
1409
-
Val
TAC
[ENA]
¢þ
>WENV170569790
FLMP01304644
[FLMP] seawater metagenome; seawater
82
5
-
Val
TAC
[ENA]
¢þ
>WENV170783565
MAAC01017881
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
3206
3129
-
Val
TAC
[ENA]
¢þ
>C181175182
CP029151
Bacteroidota
Dokdonia sp. Dokd-P16 [CP029151]
2020573
2020648
+
Val
TAC
-
¡û
>C181175183
CP029151
Bacteroidota
Dokdonia sp. Dokd-P16 [CP029151]
2020685
2020760
+
Val
TAC
-
¡û
>C10102654
CP002046
Bacteroidota
Croceibacter atlanticus HTCC2559 [CP002046]
1486380
1486455
+
Val
TAC
[Ensembl]
¡û
>C161105083
HG315671
Bacteroidota
Formosa agariphila KMM 3901 type strain: KMM 3901 [HG315671]
3333375
3333298
-
Val
TAC
[Ensembl]
¡û
>C161105084
HG315671
Bacteroidota
Formosa agariphila KMM 3901 type strain: KMM 3901 [HG315671]
3333232
3333155
-
Val
TAC
[Ensembl]
¡û
>W1710582211
FPKV01000001
Bacteroidota
Flaviramulus basaltis [FPKV]
178451
178374
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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