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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.17241 (5 seq.)
>WENV181383886
OFRH01000127
[OFRH] wastewater metagenome; Exp Tend NO 100WW
2035
1945
-
Ser
GCT
[ENA]
¢þ
>WENV181839092
OGVN01064679
[OGVN] freshwater metagenome; freshwater
202
114
-
Ser
GCT
[ENA]
¢þ
>WENV021419
AACY020569886
Marine microbial communities from Global Ocean Sampling (GOS)
217
309
+
Ser
GCT
[ENA]
>WENV022340
AACY020642518
Marine microbial communities from Global Ocean Sampling (GOS)
252
344
+
Ser
GCT
[ENA]
>WENV023642
AACY020743386
Marine microbial communities from Global Ocean Sampling (GOS)
350
258
-
Ser
GCT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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