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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.172486 (44 seq.)
>W1711117566
LUDG01000002
Bacteroidota
Riemerella anatipestifer [LUDG]
256500
256577
+
Val
TAC
[ENA]
¡û
>W1711117786
LUDM01000001
Bacteroidota
Riemerella anatipestifer [LUDM]
215688
215611
-
Val
TAC
[ENA]
¡û
>W1711117814
LUDN01000001
Bacteroidota
Riemerella anatipestifer [LUDN]
254960
255037
+
Val
TAC
[ENA]
¡û
>W1711118117
LUDV01000002
Bacteroidota
Riemerella anatipestifer [LUDV]
254836
254913
+
Val
TAC
[ENA]
¡û
>W1711300469
MAGZ01000018
Bacteroidota
Elizabethkingia meningoseptica [MAGZ]
44982
44907
-
Val
TAC
[ENA]
¡û
>W1711300644
MAHE01000002
Bacteroidota
Elizabethkingia meningoseptica [MAHE]
50831
50756
-
Val
TAC
[ENA]
¡û
>W1711300685
MAHF01000003
Bacteroidota
Elizabethkingia meningoseptica [MAHF]
6913
6988
+
Val
TAC
[ENA]
¡û
>W1711344636
MCJH01000007
Bacteroidota
Elizabethkingia meningoseptica [MCJH]
112065
112140
+
Val
TAC
[ENA]
¡û
>W1711392151
MENH01000012
Bacteroidota
Bacteroidetes bacterium GWA2_40_14 [MENH]
14465
14390
-
Val
TAC
[ENA]
¡û
>W1711392152
MENH01000012
Bacteroidota
Bacteroidetes bacterium GWA2_40_14 [MENH]
14364
14287
-
Val
TAC
[ENA]
¡û
>W1711392801
MENY01000036
Bacteroidota
Bacteroidetes bacterium GWE2_40_63 [MENY]
14460
14385
-
Val
TAC
[ENA]
¡û
>W1711392802
MENY01000036
Bacteroidota
Bacteroidetes bacterium GWE2_40_63 [MENY]
14359
14282
-
Val
TAC
[ENA]
¡û
>W1711393187
MEOJ01000005
Bacteroidota
Bacteroidetes bacterium GWF2_40_13 [MEOJ]
14464
14389
-
Val
TAC
[ENA]
¡û
>W1711393188
MEOJ01000005
Bacteroidota
Bacteroidetes bacterium GWF2_40_13 [MEOJ]
14363
14286
-
Val
TAC
[ENA]
¡û
>W1711393874
MEPN01000078
Bacteroidota
Bacteroidetes bacterium RIFOXYC2_FULL_40_12 [MEPN]
24159
24234
+
Val
TAC
[ENA]
¡û
>W1711393875
MEPN01000078
Bacteroidota
Bacteroidetes bacterium RIFOXYC2_FULL_40_12 [MEPN]
24260
24337
+
Val
TAC
[ENA]
¡û
>WENV180082530
MPMC02231500
[MPMC] marine metagenome; 100 m water sample filtered on 30 um supor filter
351
276
-
Val
TAC
[ENA]
¢þ
>WENV180311744
OBJT01532037
[OBJT] soil metagenome; soil
110
35
-
Val
TAC
[ENA]
¢þ
>WENV182255097
OHTC01004105
[OHTC] human gut metagenome; feces
2250
2175
-
Val
TAC
[ENA]
¢þ
>WENV182550706
OJCA01031466
[OJCA] seawater metagenome; Sea water
283
358
+
Val
TAC
[ENA]
¢þ
>WENV170642684
JFJP01043402
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
10145
10222
+
Val
TAC
[ENA]
¢þ
>C181175932
CP029187
Bacteroidota
Flavobacterium pallidum HYN0049 [CP029187]
1601450
1601525
+
Val
TAC
-
¡û
>C181175946
CP029187
Bacteroidota
Flavobacterium pallidum HYN0049 [CP029187]
2809386
2809461
+
Val
TAC
-
¡û
>C191116179
CP033929
Bacteroidota
Chryseobacterium indoltheticum ATCC 27950 [CP033929]
343097
343022
-
Val
TAC
-
¡û
>C191116523
CP033934
Bacteroidota
Chryseobacterium balustinum KC_1863 [CP033934]
4275683
4275758
+
Val
TAC
-
¡û
>W1910808923
MUGT01000012
Bacteroidota
Flavobacterium branchiophilum ATCC 35035 [MUGT]
4914
4837
-
Val
TAC
[ENA]
¡û
>W1910808924
MUGT01000012
Bacteroidota
Flavobacterium branchiophilum ATCC 35035 [MUGT]
4807
4732
-
Val
TAC
[ENA]
¡û
>W1910808956
MUGT01000135
Bacteroidota
Flavobacterium branchiophilum ATCC 35035 [MUGT]
5283
5358
+
Val
TAC
[ENA]
¡û
>W1911564290
PCMW01000068
Bacteroidota
Flavobacterium branchiophilum ATCC 35036 [PCMW]
14918
14841
-
Val
TAC
[ENA]
¡û
>W1911564291
PCMW01000068
Bacteroidota
Flavobacterium branchiophilum ATCC 35036 [PCMW]
14811
14736
-
Val
TAC
[ENA]
¡û
>W1911701982
QNVW01000001
Bacteroidota
Chryseobacterium sp. 5_R23647 [QNVW]
391440
391365
-
Val
TAC
[ENA]
¡û
>C11118454
CP002346
Bacteroidota
Riemerella anatipestifer ATCC 11845 = DSM 15868 [CP002346]
1422526
1422449
-
Val
TAC
[Ensembl]
¡û
>W1610507435
FLSV01000005
Bacteroidota
Elizabethkingia meningoseptica [FLSV]
112174
112249
+
Val
TAC
[ENA]
¡û
>W1610597209
LFEG01000046
Bacteroidota
Chryseobacterium sp. MOF25P [LFEG]
71402
71479
+
Val
TAC
[ENA]
¡û
>W1610928925
LUDG01000002
Bacteroidota
Riemerella anatipestifer [LUDG]
256500
256577
+
Val
TAC
[ENA]
¡û
>W1610929145
LUDM01000001
Bacteroidota
Riemerella anatipestifer [LUDM]
215688
215611
-
Val
TAC
[ENA]
¡û
>W1610929173
LUDN01000001
Bacteroidota
Riemerella anatipestifer [LUDN]
254960
255037
+
Val
TAC
[ENA]
¡û
>W1610929476
LUDV01000002
Bacteroidota
Riemerella anatipestifer [LUDV]
254836
254913
+
Val
TAC
[ENA]
¡û
>W1710499653
FLSV01000005
Bacteroidota
Elizabethkingia meningoseptica [FLSV]
112174
112249
+
Val
TAC
[ENA]
¡û
>W1710519769
FNEZ01000002
Bacteroidota
Flavobacterium noncentrifugens [FNEZ]
89703
89626
-
Val
TAC
[ENA]
¡û
>W1710519773
FNEZ01000004
Bacteroidota
Flavobacterium noncentrifugens [FNEZ]
106147
106070
-
Val
TAC
[ENA]
¡û
>W1710582251
FPKW01000008
Bacteroidota
Chryseobacterium limigenitum [FPKW]
600
523
-
Val
TAC
[ENA]
¡û
>W1710590242
FRAV01000020
Bacteroidota
Chryseobacterium polytrichastri [FRAV]
412
335
-
Val
TAC
[ENA]
¡û
>W1710718533
LFEG01000046
Bacteroidota
Chryseobacterium sp. MOF25P [LFEG]
71402
71479
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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