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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.172958 (43 seq.)
>WENV180696626
ODCT01048277
[ODCT] human metagenome; G_DNA_Buccal mucosa
175
250
+
Pro
GGG
[ENA]
¢þ
>WENV180708206
ODFJ01000540
[ODFJ] human metagenome; G_DNA_Tongue dorsum
18942
19017
+
Pro
GGG
[ENA]
¢þ
>WENV180724098
ODGR01000084
[ODGR] human metagenome; G_DNA_Tongue dorsum
10886
10961
+
Pro
GGG
[ENA]
¢þ
>WENV180759714
ODHY01095246
[ODHY] human metagenome; G_DNA_Buccal mucosa
19
94
+
Pro
GGG
[ENA]
¢þ
>WENV180767863
ODIG01001029
[ODIG] human metagenome; G_DNA_Tongue dorsum
16316
16391
+
Pro
GGG
[ENA]
¢þ
>WENV180768119
ODIG01002778
[ODIG] human metagenome; G_DNA_Tongue dorsum
227
152
-
Pro
GGG
[ENA]
¢þ
>WENV180778996
ODIN01000087
[ODIN] human metagenome; G_DNA_Throat
19157
19232
+
Pro
GGG
[ENA]
¢þ
>WENV180794866
ODIZ01008427
[ODIZ] human metagenome; G_DNA_Tongue dorsum
1583
1508
-
Pro
GGG
[ENA]
¢þ
>WENV180807089
ODJI01000496
[ODJI] human metagenome; G_DNA_Tongue dorsum
14744
14669
-
Pro
GGG
[ENA]
¢þ
>WENV180843770
ODKN01011330
[ODKN] human metagenome; G_DNA_Supragingival plaque
2196
2271
+
Pro
GGG
[ENA]
¢þ
>WENV180860794
ODLE01000114
[ODLE] human metagenome; G_DNA_Tongue dorsum
22743
22818
+
Pro
GGG
[ENA]
¢þ
>WENV180877459
ODLV01000103
[ODLV] human metagenome; G_DNA_Tongue dorsum
29931
29856
-
Pro
GGG
[ENA]
¢þ
>WENV180879138
ODLZ01000074
[ODLZ] human metagenome; G_DNA_Tongue dorsum
26615
26690
+
Pro
GGG
[ENA]
¢þ
>WENV180959001
ODUM01000021
[ODUM] human metagenome; G_DNA_Tongue dorsum
155527
155602
+
Pro
GGG
[ENA]
¢þ
>WENV180974742
ODUX01084217
[ODUX] human metagenome; G_DNA_Buccal mucosa
135
210
+
Pro
GGG
[ENA]
¢þ
>WENV180977316
ODUZ01000300
[ODUZ] human metagenome; G_DNA_Tongue dorsum
2746
2671
-
Pro
GGG
[ENA]
¢þ
>WENV181009674
ODWE01144783
[ODWE] human metagenome; G_DNA_Supragingival plaque
88
163
+
Pro
GGG
[ENA]
¢þ
>WENV181010870
ODWI01000533
[ODWI] human metagenome; G_DNA_Tongue dorsum
8093
8168
+
Pro
GGG
[ENA]
¢þ
>WENV181016095
ODWR01000197
[ODWR] human metagenome; G_DNA_Tongue dorsum
10873
10948
+
Pro
GGG
[ENA]
¢þ
>WENV181040467
ODXS01000029
[ODXS] human metagenome; G_DNA_Tongue dorsum
116
41
-
Pro
GGG
[ENA]
¢þ
>WENV181043748
ODXV01000636
[ODXV] human metagenome; G_DNA_Tongue dorsum
2118
2043
-
Pro
GGG
[ENA]
¢þ
>WENV181077461
OEAP01061910
[OEAP] human metagenome; G_DNA_Supragingival plaque
86
161
+
Pro
GGG
[ENA]
¢þ
>WENV181086089
OEAY01000077
[OEAY] human metagenome; G_DNA_Tongue dorsum
59848
59773
-
Pro
GGG
[ENA]
¢þ
>WENV181096810
OECA01000414
[OECA] human metagenome; G_DNA_Tongue dorsum
21719
21794
+
Pro
GGG
[ENA]
¢þ
>WENV181103514
OECV01000058
[OECV] human metagenome; G_DNA_Throat
2264
2189
-
Pro
GGG
[ENA]
¢þ
>WENV181104597
OEED01000007
[OEED] human metagenome; G_DNA_Tongue dorsum
84546
84471
-
Pro
GGG
[ENA]
¢þ
>WENV181149961
OEHW01000129
[OEHW] human metagenome; G_DNA_Tongue dorsum
19120
19045
-
Pro
GGG
[ENA]
¢þ
>WENV181176160
OEJR01000053
[OEJR] human metagenome; G_DNA_Saliva
15736
15661
-
Pro
GGG
[ENA]
¢þ
>WENV181996689
OHAU01000233
[OHAU] human gut metagenome; faeces
79536
79611
+
Pro
GGG
[ENA]
¢þ
>W141226294
BAJY01000019
Bacteroidota
Prevotella falsenii JCM 15124 [BAJY]
21272
21347
+
Pro
GGG
[ENA]
¡û
>W141277947
JAEZ01000001
Bacteroidota
Prevotella intermedia ATCC 25611 = DSM 20706 [JAEZ]
324824
324747
-
Pro
GGG
[ENA]
¡û
>WENV183114956
OLNQ01002653
[OLNQ] human gut metagenome; faeces
275
200
-
Pro
GGG
[ENA]
¢þ
>WENV183510276
OMHN01001627
[OMHN] human oral metagenome; human oral
144
69
-
Pro
GGG
[ENA]
¢þ
>C181103934
CP024697
Bacteroidota
Prevotella intermedia KCOM 2836 [CP024697]
1578475
1578550
+
Pro
GGG
-
¡û
>C181104663
CP024723
Bacteroidota
Prevotella intermedia KCOM 2837 [CP024723, CP024724]
1839027
1839102
+
Pro
GGG
-
¡û
>C181104709
CP024725
Bacteroidota
Prevotella intermedia KCOM 2838 [CP024725, CP024726]
1271430
1271355
-
Pro
GGG
-
¡û
>W1911248003
NSMA01000001
Bacteroidota
Prevotella intermedia WW414 [NSMA]
237006
236931
-
Pro
GGG
[ENA]
¡û
>W1911767241
QXEM01000001
Bacteroidota
Prevotella intermedia ATCC 15032 [QXEM]
50268
50343
+
Pro
GGG
[ENA]
¡û
>W1810084806
PESN01000001
Bacteroidota
Prevotella intermedia KCOM 2069 [PESN]
988841
988766
-
Pro
GGG
[ENA]
¡û
>W11170851
AFPX01000023
Bacteroidota
Prevotella nigrescens ATCC 33563 [AFPX]
9199
9276
+
Pro
GGG
[ENA]
¡û
>W11170892
AFPY01000036
Bacteroidota
Prevotella pallens ATCC 700821 [AFPY]
8704
8779
+
Pro
GGG
[ENA]
¡û
>W1610583856
LBGT01000034
Bacteroidota
Prevotella intermedia [LBGT]
117732
117655
-
Pro
GGG
[ENA]
¡û
>W1710703004
LBGT01000034
Bacteroidota
Prevotella intermedia [LBGT]
117732
117655
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK