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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.173170 (39 seq.)
>W1711116056
LUAS01000004
Betaproteobacteria
Oligella sp. HMSC09E12 [LUAS]
40505
40429
-
Met
CAT
[ENA]
¡û
>W1711185191
LWNE01000124
Betaproteobacteria
Oligella sp. HMSC05A10 [LWNE]
64000
64076
+
Met
CAT
[ENA]
¡û
>W131159433
AQVB01000002
Betaproteobacteria
Oligella urethralis DSM 7531 [AQVB]
115748
115824
+
Met
CAT
[ENA]
¡û
>W131169117
AREM01000017
Betaproteobacteria
Oligella ureolytica DSM 18253 [AREM]
53334
53410
+
Met
CAT
[ENA]
¡û
>W141200390
AYXT01000010
Betaproteobacteria
Advenella kashmirensis W13003 [AYXT]
353069
352993
-
Met
CAT
[ENA]
¡û
>WENV183705503
PDWI01001690
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
42568
42492
-
Met
CAT
[ENA]
¢þ
>WENV170689062
LFRM01275003
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1911
1835
-
Met
CAT
[ENA]
¢þ
>WENV170691405
LFRM01395971
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
12007
12083
+
Met
CAT
[ENA]
¢þ
>WENV170719304
LSQX01109696
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
12073
12149
+
Met
CAT
[ENA]
¢þ
>WENV170720167
LSQX01143716
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
39
115
+
Met
CAT
[ENA]
¢þ
>WENV170721569
LSQX01195375
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
4949
5025
+
Met
CAT
[ENA]
¢þ
>WENV170722179
LSQX01219880
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
13409
13485
+
Met
CAT
[ENA]
¢þ
>WENV170726858
LSQX01396425
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
29348
29424
+
Met
CAT
[ENA]
¢þ
>C181049075
CP021060
Betaproteobacteria
Taylorella equigenitalis 92-0972 [CP021060]
567108
567184
+
Met
CAT
-
¡û
>C181049940
CP021199
Betaproteobacteria
Taylorella equigenitalis 89-0490 [CP021199]
552702
552778
+
Met
CAT
-
¡û
>C181049977
CP021200
Betaproteobacteria
Taylorella equigenitalis 79-1587 [CP021200]
584113
584189
+
Met
CAT
-
¡û
>C181050014
CP021201
Betaproteobacteria
Taylorella equigenitalis 09-0932 [CP021201]
552042
552118
+
Met
CAT
-
¡û
>C181050096
CP021246
Betaproteobacteria
Taylorella equigenitalis 98-0554 [CP021246]
560938
561014
+
Met
CAT
-
¡û
>C181152574
CP027417
Betaproteobacteria
Oligella urethralis FDAARGOS_329 [CP027417]
850933
851009
+
Met
CAT
-
¡û
>C191208063
LR134346
Betaproteobacteria
Taylorella equigenitalis ATCC 35865 NCTC11184 [LR134346]
553776
553852
+
Met
CAT
-
¡û
>W141560350
JHXN01000001
Betaproteobacteria
Taylorella asinigenitalis ATCC 700933 [JHXN]
366995
366919
-
Met
CAT
[ENA]
¡û
>W141562682
JHZJ01000005
Betaproteobacteria
Brackiella oedipodis DSM 13743 [JHZJ]
32728
32652
-
Met
CAT
[ENA]
¡û
>W1910225811
FMSW01000011
Betaproteobacteria
Pelistega sp. MC2 [FMSW]
377210
377286
+
Met
CAT
[ENA]
¡û
>W1910891678
NEXS01000003
Betaproteobacteria
Advenella sp. S44 [NEXS]
1328285
1328209
-
Met
CAT
[ENA]
¡û
>W1911595541
PNGK01000008
Betaproteobacteria
Oligella urethralis UMB0345 [PNGK]
32987
33063
+
Met
CAT
[ENA]
¡û
>W1810701970
QMFX01000003
Betaproteobacteria
Taylorella equigenitalis 210217RC10635 [QMFX]
159320
159396
+
Met
CAT
[ENA]
¡û
>C151004924
CP003915
Betaproteobacteria
Advenella mimigardefordensis DPN7 [CP003915]
2627204
2627280
+
Met
CAT
[Ensembl]
¡û
>C151046304
CP009238
Betaproteobacteria
Basilea psittacipulmonis DSM 24701 [CP009238]
1056104
1056180
+
Met
CAT
[Ensembl]
¡û
>W1511350713
JRMO01000013
Betaproteobacteria
Taylorella equigenitalis MCE529 [JRMO]
160522
160598
+
Met
CAT
[ENA]
¡û
>W1511351536
JRNI01000017
Betaproteobacteria
Oligella urethralis DNF00040 [JRNI]
44601
44525
-
Met
CAT
[ENA]
¡û
>C11122615
CP002456
Betaproteobacteria
Taylorella equigenitalis MCE9 [CP002456]
1204188
1204264
+
Met
CAT
[Ensembl]
¡û
>W1511458953
JVJW01000112
Betaproteobacteria
Oligella urethralis 368_TASI [JVJW]
75527
75603
+
Met
CAT
[ENA]
¡û
>W1511461275
JVMH01000139
Betaproteobacteria
Oligella urethralis 303_AMIM [JVMH]
45390
45314
-
Met
CAT
[ENA]
¡û
>W11171207
AFQG01000057
Betaproteobacteria
Advenella kashmirensis WT001 [AFQG]
30847
30923
+
Met
CAT
[ENA]
¡û
>C121004839
CP003059
Betaproteobacteria
Taylorella asinigenitalis MCE3 [CP003059]
592769
592845
+
Met
CAT
[Ensembl]
¡û
>C121009926
CP003264
Betaproteobacteria
Taylorella equigenitalis ATCC 35865 [CP003264]
584106
584182
+
Met
CAT
[Ensembl]
¡û
>W1610606588
LFTA01000242
Betaproteobacteria
Alcaligenaceae bacterium DTU041 [LFTA]
12007
12083
+
Met
CAT
[ENA]
¡û
>W1710004104
AFWK01000017
Betaproteobacteria
Basilea psittacipulmonis DSM 24701 [AFWK]
58122
58046
-
Met
CAT
[ENA]
¡û
>W1710727875
LFTA01000242
Betaproteobacteria
Alcaligenaceae bacterium DTU041 [LFTA]
12007
12083
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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